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Tom Baden

@neurofishh.bsky.social

NeuroProf@Sussex, UK. Vision, Evolution, Computation Open Science www.badenlab.org

1,449 Followers  |  1,766 Following  |  78 Posts  |  Joined: 16.11.2024
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Posts by Tom Baden (@neurofishh.bsky.social)

Ohh.... #biology #lego

01.03.2026 17:57 β€” πŸ‘ 116    πŸ” 39    πŸ’¬ 2    πŸ“Œ 2

We are so lucky in the UK to have access to this unique funding stream, which emphasises bold but β€˜quirky’ ideas that are essentially unfundable elsewhere. Key is also the sustained support (up to 5years) because it takes time to do things properly πŸ™πŸ½ .

28.02.2026 10:06 β€” πŸ‘ 4    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

The @leverhulme.ac.uk was the first to support this new direction of the lab, for example funding first author @gkafetzis.bsky.social β€˜s PhD, and by centrally chipping in to various exciting evo directions over the years.

28.02.2026 10:06 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Happy to see how our collab. paper on the origin of the vertebrate eye is tickling the public interest. Our ongoing shuffle from systems neuro to evo-neuro over recent years continues to be a delight! We are supported by various funders, but I want to point out one in particular: @leverhulme.ac.uk

28.02.2026 10:06 β€” πŸ‘ 9    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0
Preview
The molecular evolution of vertebrate organs Nature Ecology & Evolution - This Review discusses recent advances in the molecular evolution of vertebrate organs, including rates of evolution of organs and cell types, molecular mechanisms...

Our internal organs are evolutionary marvels. New technologies are transforming our understanding of the evolution of vertebrate organs. You can find more by reading here:
rdcu.be/e5EgU
#EvoBio #EvoDevo πŸŸπŸ¦ŽπŸ’πŸ¦‡πŸŠπŸ¦œ

25.02.2026 12:29 β€” πŸ‘ 128    πŸ” 50    πŸ’¬ 2    πŸ“Œ 4
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#PaidInternship #Internship #Journalism

25.02.2026 11:12 β€” πŸ‘ 59    πŸ” 64    πŸ’¬ 0    πŸ“Œ 2
Details | Working at Bristol | University of Bristol

🚨JOB alert🚨

We have three (yes, THREE) 🌟lectureships🌟 advertised in the School of Biological Sciences, University of Bristol.

Broad remit, including #AnimalBehaviour & #GlobalChangeBiology

⏱️Deadline: 8th March 2026
πŸ™Please circulate widely

😊Come join us!

Full #job details: tinyurl.com/y3us95rc

23.02.2026 18:13 β€” πŸ‘ 61    πŸ” 95    πŸ’¬ 0    πŸ“Œ 0
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From our new paper out now in @currentbiology.bsky.social: www.cell.com/current-biol... w/ @neurofishh.bsky.social @gkafetzis.bsky.social @denilsson.bsky.social

Looking across animals, the vertebrate eye is an obvious outlier. Why is it so different that other highly visual animals?

24.02.2026 10:45 β€” πŸ‘ 108    πŸ” 39    πŸ’¬ 1    πŸ“Œ 2
Preview
The Rise of Eyes Began With Just One

Thanks for highlighting this!

Here some news coverage to
go with it: www.nytimes.com/2026/02/23/s...

24.02.2026 09:56 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Preview
The Rise of Eyes Began With Just One

Vision Science makes the front page of NYT!!
featuring work from @neurofishh.bsky.social and @denilsson.bsky.social with comments from Berkeley's own @karthikshekhar.bsky.social
#visionscience

www.nytimes.com/2026/02/23/s...

24.02.2026 03:15 β€” πŸ‘ 40    πŸ” 16    πŸ’¬ 0    πŸ“Œ 1

Out now in @currentbiology.bsky.social!

A dive into the deep history of vertebrate vision, together with @mikebok.bsky.social, @neurofishh.bsky.social and @denilsson.bsky.social

Photo credit : Vasilis Karkalas

23.02.2026 17:55 β€” πŸ‘ 46    πŸ” 21    πŸ’¬ 3    πŸ“Œ 0
JOB ALERT!

Lecturer in Biological Sciences

Come and join us in the world class Life Sciences Building at the University of Bristol!

Closing date: Sunday 8 March

JOB ALERT! Lecturer in Biological Sciences Come and join us in the world class Life Sciences Building at the University of Bristol! Closing date: Sunday 8 March

JOB ALERT!

Lecturer in Biological Sciences

Interested in our research areas? Click the link in our bio to discover more!

Closing date: Sunday 8 March

JOB ALERT! Lecturer in Biological Sciences Interested in our research areas? Click the link in our bio to discover more! Closing date: Sunday 8 March

JOB ALERT!

We are excited to announce that we are recruiting three new academics at lecturer level!

Click the link below for more info on how to apply, and don’t forget to explore our research themes too!

We look forward to receiving your applications!

www.bristol.ac.uk/jobs/find/de...

12.02.2026 09:13 β€” πŸ‘ 52    πŸ” 72    πŸ’¬ 0    πŸ“Œ 6

an actual answer, i suspect, can only come from lamprey physiology

13.02.2026 06:52 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Im thinking that the earliest vertebrate eyes were very small, so SACs also would have been small. too small, perhaps, to usefully compute actionable ds. retinotopy however is presumably preexisting trait of the projection system (RGC). so sacs sharpening that is plausible even on weak effects

13.02.2026 06:52 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Details | Working at Bristol | University of Bristol

We are recruiting three new lecturers!

Read on if you'd like to bring your passion for biology to @bristolbiosci.bsky.social at @bristoluni.bsky.social and join our team of ambitious, creative, inclusive and collaborative researcher–educators:

www.bristol.ac.uk/jobs/find/de...

11.02.2026 21:30 β€” πŸ‘ 7    πŸ” 11    πŸ’¬ 0    πŸ“Œ 2
An ON-type direction-selective ganglion cell in primate retina - Nature Transcriptomic data and functional experiments on macaque retina are used to identify the ON-type direction-selective ganglion cells responsible for detecting moving images and initiating gaze-stabili...

You mean mouse-like DS? Yes, in particular 2 recentish papers, www.nature.com/articles/s41... and www.nature.com/articles/s41...

09.02.2026 09:39 β€” πŸ‘ 4    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0

Conserved outside mammals? Is that shown? DS signals in RGCs, sure, but necessity of SACs for this DS? Also in baby zebrafish, SAC not obviously DS and satb2 RGC only go DS in juveniles, but DS signals exist before that, hinting at non-SAC mechanisms? At any rate, much to still discover I am sure :)

05.02.2026 18:13 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

so what’s the evolutionary β€˜original’? adult DS, or this? plausible hypothesis: SACs are for organising the retina in development, DS-use is derived? Heresy I am sure (ducks)… I think all verts have SAC, but do all verts have SAC dependent DS?

05.02.2026 07:09 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Preview
Research Group Leader Do you want to lead groundbreaking research in computational biology? Join us at EMBL-EBI! EMBL's European Bioinformatics Institute (EMBL-EBI) is seeking talented and highly-motivated scientists to jo...

We are hiring for group leaders again β€” EBI is a great place to start your research group!

embl.wd103.myworkdayjobs.com/EMBL/job/Hin...

30.01.2026 09:02 β€” πŸ‘ 66    πŸ” 89    πŸ’¬ 0    πŸ“Œ 2
PNAS Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...

How does a predator sense its prey?
πŸͺ±The nematode Pristionchus pacificus preys on other nematodes, but how it detects them in its environment? That is what we have been exploring :

www.pnas.org/doi/10.1073/...

28.01.2026 18:35 β€” πŸ‘ 21    πŸ” 7    πŸ’¬ 3    πŸ“Œ 1
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For this new year, we are proud to announce the launch of Spikeling v3 !

Spikeling is an Open-Source neuroscience education platform that brings a patch-clamp-style electrophysiology workflow into the classroom.

#Neuroscience #OpenScience #OpenHardware #Education

27.01.2026 10:08 β€” πŸ‘ 8    πŸ” 3    πŸ’¬ 1    πŸ“Œ 1

@mmaravall.bsky.social @leonlagnado.bsky.social @sussexneuro.bsky.social

27.01.2026 19:28 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

I’ve been using Spikeling in teaching and outreach for the past 4 years, and it’s been a really effective way to make neuroscience concepts more approachable and engaging.

Hands-on tools like this really help move neuroscience teaching forward 🧠⚑

Have a look πŸ‘‡

27.01.2026 19:18 β€” πŸ‘ 7    πŸ” 3    πŸ’¬ 0    πŸ“Œ 1
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My collaborator at University of Copenhagen, Anders Garm, is looking for a 3 year postdoc to work on bioluminescence, neurobiology and ecology of ctenophores. More information here:
candidate.hr-manager.net/ApplicationI...

21.01.2026 10:45 β€” πŸ‘ 62    πŸ” 41    πŸ’¬ 1    πŸ“Œ 2
Nanodiamonds for spatial resolution benchmarking in two-photon microscopy Reliable and reproducible measurement of spatial resolution is essential for validating and comparing the performance of two-photon microscopy systems. We present fluorescent nanodiamonds as robust, photostable, reusable, and biocompatible probes for benchmarking spatial resolution. Owing to their nanoscale dimensions and stable fluorescence, nanodiamonds act as near-ideal point-like emitters, enabling accurate characterisation of the point spread function across varying imaging conditions. We demonstrate that nanodiamond-based phantoms serve as a reliable alternative to conventional fluorescent beads embedded in agarose, while at the same time offering advantages in stability and optical properties. Our results position nanodiamond phantoms as a next-generation calibration material that bridges ease of use and reproducibility, advancing quantitative imaging and cross-platform comparability in modern fluorescence microscopy. ### Competing Interest Statement The authors have declared no competing interest. Wellcome Trust, https://ror.org/029chgv08, Investigator Award in Science 220277/Z20/Z European Research Council, https://ror.org/0472cxd90, ERC-StG Β“NeuroVisEcoΒ” 677687, ERC AdG Β“Cones4ActionΒ” covered under the UKΒ’s EPSRC guarantee scheme EP/Z533981/1 UK Research and Innovation, https://ror.org/001aqnf71, BBSRC, BB/R014817/1, BBSRC, BB/W013509/1 International Human Frontier Science Program Organization, https://ror.org/02ebx7v45, RGP001/2025 Leverhulme Trust, https://ror.org/012mzw131, PLP-2017-005, RPG-2021-026, RPG-2-23-042 Lister Institute of Preventive Medicine Gdańsk University of Technology, https://ror.org/006x4sc24, Nobelium DEC-4/1/2024/IDUB/I.1a/No, Platinum 1/1/2025/IDUB/I.1B/Pt

1/10 New preprint on bioRxiv
Nanodiamonds for spatial resolution benchmarking in two-photon microscopy

We introduce nanodiamond-based phantoms as a robust, reusable alternative to bead–agarose samples for PSF calibration.

www.biorxiv.org/content/10.6...

14.01.2026 15:28 β€” πŸ‘ 6    πŸ” 5    πŸ’¬ 1    πŸ“Œ 0

Do direction and orientation preferences form maps in the mouse superior colliculus (SC)?
We examined how motion and orientation tuning are organized in SC neurons and their retinal inputsβ€”and how the retinal topography is transformed by collicular circuits.
tinyurl.com/mr2zt5rm

πŸ§΅πŸ‘‡

24.12.2025 13:41 β€” πŸ‘ 18    πŸ” 5    πŸ’¬ 1    πŸ“Œ 1

Thanks for your brilliant talk! Come for the ants, stay for β€˜juicy’ evolutionary principles :)

18.11.2025 15:43 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Had a great visit to @sussexneuro.bsky.social and @neurofishh.bsky.social today. Such a pleasure to chat with a bunch of clever and interesting folks, see a menagerie of interesting creatures and see the sea.

17.11.2025 21:40 β€” πŸ‘ 4    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0
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Ending my #FluorescenceFriday with this beautiful avian retina image depicting the beautiful stratification in the avian eyes.
This is where complexity meets art.
#retina #avian #bird #plexiformlayer

14.11.2025 16:19 β€” πŸ‘ 71    πŸ” 12    πŸ’¬ 3    πŸ“Œ 2

really very nice :)

06.11.2025 18:32 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0