Bruno Contreras Moreira's Avatar

Bruno Contreras Moreira

@brunocontrerasm.bsky.social

Biología computacional y genómica de plantas http://eead-csic-compbio.github.io https://linkedin.com/in/brunocontrerasm @BrunoContrerasM

49 Followers  |  96 Following  |  35 Posts  |  Joined: 16.11.2023
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Posts by Bruno Contreras Moreira (@brunocontrerasm.bsky.social)

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footprintDB March 2026 version

bioinfoperl.blogspot.com/2026/03/foot...

04.03.2026 13:55 — 👍 0    🔁 0    💬 0    📌 0
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IV Jornada de Bioinformática en Aragón

bioinfoperl.blogspot.com/2026/02/iv-j...

18.02.2026 10:18 — 👍 0    🔁 0    💬 0    📌 0
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adiós a Peer Bork

bioinfoperl.blogspot.com/2026/01/adio...

19.01.2026 12:04 — 👍 0    🔁 0    💬 0    📌 0
NCBI Blast 2.17.0+ es más rápido y acepta FASTAs comprimidos

bioinfoperl.blogspot.com/2026/01/blas...

08.01.2026 12:24 — 👍 0    🔁 0    💬 0    📌 0
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Parecidos ocultos entre proteínas revelados por inmersión

bioinfoperl.blogspot.com/2026/01/pare...

07.01.2026 08:57 — 👍 0    🔁 0    💬 0    📌 0
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A new edition of the bioinformatics unit at the Master's in Plant Genetics, Genomics and Breeding

This week we have been training in bioinformatics with a group of 23 students enrolled at the International Master in Plant Genetics, Genomics and Breeding, organized by CIHEAM Zaragoza , read more at bioinfoperl.blogspot.com/2025/12/new-...

@ebi.embl.org

19.12.2025 08:07 — 👍 2    🔁 0    💬 0    📌 0
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📢 BCBHub Online Seminar: Bioinformatic Tools! Last session!🎙️ Speakers 👉 Bruno Contreras – GET_HOMOLOGUES -11:00h to 11:40h 👉 Ugo Bastolla - TNM, PC_ali & SSCPE- 11:50h to 12:30h 📆 Date: Dec 3 📺 Live stream: goo.su/BeUkuzn
‪@cbm-csic-uam.bsky.social‬ @brunocontrerasm.bsky.social‬‬‬‬‬‬‬
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24.11.2025 11:16 — 👍 0    🔁 1    💬 0    📌 1
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Jornadas de Bioinformática JBI2025

Mis notas de las #JBI2025: bioinfoperl.blogspot.com/2025/10/jorn...

24.10.2025 18:12 — 👍 0    🔁 0    💬 0    📌 0

Si hoy te perdiste la jornada virtual 'Pangenómica de cereales en la Web', organizada por la Red Ceres Spain, tienes el material en digital.csic.es/handle/10261...

17.10.2025 14:11 — 👍 0    🔁 0    💬 0    📌 0
Nature Awards Inspiring Women in Science Celebrating and supporting the achievements of women in science, and all those who work to encourage girls and young women to engage with STEM subjects and stay in STEM careers around the world.

Es una alegría ver a Valerie De Anda entre las nominadas de
www.nature.com/immersive/in...
@gacetaunam.bsky.social @csic.es

17.09.2025 14:39 — 👍 0    🔁 0    💬 0    📌 0
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Reseña muy interesante, en inglés, para aprender cómo se pueden identificar genes responsables de reacciones metabólicas conocidas, pero huérfanas, usando las bases de datos genómicas: doi.org/10.1073/pnas...

10.09.2025 14:43 — 👍 0    🔁 0    💬 0    📌 0
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Should You Learn Perl in 2025? Why Perl still makes sense for UNIX developers in 2025. It’s not about syntax, it’s about processes, streams, and shortcuts.

Should You Learn Perl in 2025? https://cstu.io/23c749 #programmer #startup #computerscience

05.09.2025 07:01 — 👍 1    🔁 1    💬 0    📌 0
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🏫📚 Los días 25 y 26 de septiembre de 2025 el paraninfo de la Universidad de Zaragoza acogerá la IV Edición del curso sobre la Carrera Investigadora.

@unisevilla.bsky.social

25.07.2025 12:01 — 👍 1    🔁 1    💬 1    📌 0
footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces footprintDB Database

Our footprintdb.eead.csic.es server has been updated, marking the 19082025 release: bioinfoperl.blogspot.com/2025/08/foot...

19.08.2025 13:22 — 👍 1    🔁 0    💬 0    📌 0

Before this #PlantBio2025 thread closes: two exciting opportunities now open for early-career plant scientists.
1. Plantae Fellows program, apply by Aug 31 plantae.org/2026fellowsa...
2. @theplantcell.bsky.social Assistant Features Editor program, apply by Sep 15.
blog.aspb.org/the-plant-ce...

30.07.2025 16:03 — 👍 34    🔁 32    💬 0    📌 2
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Deconvolution of Single Homeologous Polymorphism (SHP) drives phylogenetic analysis of allopolyploids The genomic and evolutionary study of allopolyploid organisms involves multiple copies of homeologous chromosomes, making their assembly, annotation, and phylogenetic analysis challenging. Bioinformat...

@biorxivpreprint.bsky.social from Rubén Sancho describes phylogenies of allopolyploids out of sequence reads and the genomes of related diploid genomes. Part of PhD work, now tested on Brachypodium, Brassica, Triticum and also yeasts:
www.biorxiv.org/content/10.1...

lnkd.in/dU-Eqmfy

28.07.2025 09:30 — 👍 0    🔁 0    💬 0    📌 0
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A reproducible ddRAD-seq protocol reveals novel genomic association signatures for fruit-related traits in peach - Plant Methods Improving peach cultivars with superior traits is a primary objective of breeding initiatives. In this study, we aimed to elucidate the genetic basis of key agronomic and fruit-related traits using a ...

Check out a reproducible protocol for ddRAD-seq + GWAS benchmarked by Najla Ksouri doi.org/10.1186/s130...

Tested on peach varieties but should work on other diploid species.

Code and documentation at github.com/najlaksouri/...

PS read more In Spanish at bioinfoperl.blogspot.com/2025/07/prot...

24.07.2025 07:35 — 👍 1    🔁 1    💬 0    📌 0
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Protocolo reproducible de ddRAD-seq + GWAS

Comparto el protocolo de ddRAD-seq + GWAS de Najla Ksouri:

bioinfoperl.blogspot.com/2025/07/prot...

23.07.2025 11:56 — 👍 1    🔁 0    💬 0    📌 0
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líneas distintas entre ficheros con grep

bioinfoperl.blogspot.com/2025/07/line...

16.07.2025 14:18 — 👍 0    🔁 0    💬 0    📌 0
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IBH Seminar Announcement‼️
📜 Advances in Understanding Crown Root Formation in Barley
🔊 Nikola Kořínková. Czech Advanced Technology and Research Institute
📆 Thursday 12th June 14.00 BST
🔌 hutton.webex.com/weblink/regi...

09.06.2025 10:06 — 👍 3    🔁 3    💬 0    📌 1
Barleymap

Added BarT2 and panBaRT genes to facilitate cross-analysis at EoRNA and panBaRT at barleymap.eead.csic.es #barleymap

03.06.2025 07:46 — 👍 3    🔁 3    💬 0    📌 0
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Are groundbreaking science discoveries becoming harder to find? Researchers are arguing over whether ‘disruptive’ or ‘novel’ science is waning – and how to remedy the problem.

No había oído hablar del CD index: www.nature.com/articles/d41...

28.05.2025 10:11 — 👍 0    🔁 0    💬 0    📌 0
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Aprende a descarga datasets del NCBI desde el terminal en bioinfoperl.blogspot.com/2025/05/desc...

15.05.2025 08:21 — 👍 0    🔁 0    💬 0    📌 0
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Vernalization regulatory network identifies potential novel functions for ZCCT genes within HvVRN2 ### Competing Interest Statement The authors have declared no competing interest. Agencia Estatal de Investigación, https://ror.org/003x0zc53, AGL2016-80967-R, PID2019 111621RB I00, PID2022 142116OB...

Check out the latest preprint from Chesco Montardit's thesis at EEAD-CSIC

www.biorxiv.org/content/10.1...

06.05.2025 18:08 — 👍 0    🔁 0    💬 0    📌 0
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Thank you, Alfonso: An Impactful Bioinformatics Collection Last year marked 20 years of Alfonso leading Bioinformatics. We are expressing our gratitude and celebrating his remarkable contributions by highlighting some o

Thank you, Alfonso: An Impactful Bioinformatics Collection: academic.oup.com/bioinformati...

05.05.2025 14:46 — 👍 1    🔁 0    💬 0    📌 0

Thanks so much for the invite, had a great day, the campus was beautiful and the meetings quite fun!

30.04.2025 16:53 — 👍 1    🔁 0    💬 0    📌 0
Uso aceptable de modelos de lenguaje según la ISCB

bioinfoperl.blogspot.com/2025/04/uso-...

29.04.2025 15:28 — 👍 0    🔁 0    💬 0    📌 0
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📌Abierto el plazo de solicitudes de candidatos a las becas JAE INTRO ICU 2025 ofertadas por @bcbhubcsic.bsky.social Tienes toda la información sobre la convocatoria, planes formativos en 👉 conexion-bcb.csic.es/convocatoria... y en la sede electrónica del CSIC sede.csic.gob.es/tramites/pro....

19.03.2025 16:30 — 👍 0    🔁 2    💬 0    📌 1

bioinfoperl.blogspot.com/2025/03/asam...

14.03.2025 15:19 — 👍 0    🔁 0    💬 0    📌 0
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🚀 Exciting Opportunity 🚀
Do you have a passion for structural biology?

We're hiring at @PDBeurope! 🌟

Apply now to help annotate biological data 💻 🔬
🔗 embl.wd103.myworkdayjobs.com/en-US/EMBL/d...

Closing date: April 6, 2025

#JobOpening #StructuralBiology #Bioinformatics #ScienceJobs #Hiring

12.03.2025 15:00 — 👍 5    🔁 4    💬 0    📌 0