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Lilly Cummins

@lillycummins.bsky.social

she/her | Postdoc in Sheppard Lab @ University of Oxford | bacterial evolutionary genomics, pangenomes, AMR | I believe in equality

966 Followers  |  388 Following  |  53 Posts  |  Joined: 06.09.2023  |  1.9138

Latest posts by lillycummins.bsky.social on Bluesky

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We're pleased to announce the annual IOI Early Career Researcher Conference will be held on 20 March 2026 at Saรฏd Business School, Oxford.

A conference for early career researchers, designed by early career researchers.

Register for your free place now:
www.ineosoxford.ox.ac.uk/event/ioi-ea...

03.12.2025 09:32 โ€” ๐Ÿ‘ 3    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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The ContamCalendar 2026 will likely be the final calendar we make, so we wanted it to be a great one.

The new design folds out to be A3, perfect for displaying the beautiful microbes inside ๐Ÿ˜

Also full of microbe-related days throughout the year ๐Ÿ“†๐Ÿฆ ๐Ÿงซ๐Ÿ„

28.11.2025 14:39 โ€” ๐Ÿ‘ 8    ๐Ÿ” 3    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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๐Ÿ’ฅCONTAM CALENDAR GIVEAWAY๐Ÿ’ฅ

Here's your chance to win a ContamCalendar 2026! ๐Ÿ—“๏ธ๐Ÿ„๐Ÿฆ 

Just follow @contamclub.bsky.social and repost this post to enter the competition

Winner will be randomly selected from Bluesky or Twitter on Wednesday @ 6pm UTC

24.11.2025 16:11 โ€” ๐Ÿ‘ 13    ๐Ÿ” 25    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 1
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โ€ผ๏ธ๐Ÿšจ๐Ÿ—“๏ธ CONTAMCALENDAR 2026 ๐Ÿ—“๏ธ๐Ÿšจโ€ผ๏ธ

Excited to say the ContamCalendar is back for its fifth edition! Weโ€™ve created a fresh new design, folding out for an A3 monthly spread. Itโ€™s our best yet, we hope youโ€™ll love it ๐Ÿ—“๏ธ๐Ÿฆ ๐Ÿงซ๐Ÿ„

Get yours here โžก๏ธ www.contam.club โฌ…๏ธ

21.11.2025 15:30 โ€” ๐Ÿ‘ 27    ๐Ÿ” 14    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Look out for an exciting announcement laterโ€ฆ. ๐Ÿ‘€ #ContamCalendar

21.11.2025 10:25 โ€” ๐Ÿ‘ 4    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Identification and response to a putatively hypervirulent, carbapenem-resistant Klebsiella pneumoniae ST395 hospital outbreak in the UK Here, we describe a putatively hypervirulent, carbapenem-resistant Klebsiella pneumoniae (hv-CRKP) outbreak. Nanopore sequencing guided the infection prevention and control (IPC) responses during the ...

Our latest is out tonight in @microbiologysociety.org MGen. Using long read seq to ID and then control hospital transmission of a CRKp we believe shows genomic and clinical signs of hypervirulence

www.microbiologyresearch.org/content/jour...

20.11.2025 16:56 โ€” ๐Ÿ‘ 14    ๐Ÿ” 6    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

HUGE congrats Dr Hall ๐Ÿ‘

14.11.2025 16:55 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Brilliant day having a project meeting with @sheppardlab.bsky.social and @lillycummins.bsky.social today on our BBSRC project. I still love my research even if I get less time on it now.

12.11.2025 18:54 โ€” ๐Ÿ‘ 8    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Just submitted my abstracts. Make sure to pop yours in ๐Ÿ“

10.11.2025 19:55 โ€” ๐Ÿ‘ 3    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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What makes PhD students happy? Good supervision Supervisors who invest in positive mentoring relationships with their PhD candidates also reap the benefits for their own research.

So much of this article is full of hope then,

"About 43% of respondents had experienced some form of discrimination or harassment.. in around four out of ten bullying cases, a student reported bullying by their supervisor."

We need safeguards in place to stop this from happening.

27.10.2025 12:22 โ€” ๐Ÿ‘ 9    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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External Event Grant Login to apply

External Event Grant awards of up to ยฃ750 are available for eligible members as a contribution towards the costs of registration, travel, and accommodation to attend an event beginning in the period 01 Jan โ€“ 30 April 2026. Apply now before the deadline 01 Nov at 23:59 GMT: microb.io/ExternalEven...

23.10.2025 12:04 โ€” ๐Ÿ‘ 3    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Illustration promoting the Education and Outreach Network Winter Conference, featuring scientific icons. The event will take place online on 7 November 2025 and is free to attend.

Illustration promoting the Education and Outreach Network Winter Conference, featuring scientific icons. The event will take place online on 7 November 2025 and is free to attend.

Join us online for the Education and Outreach Network Winter Conference on 7 November 2025. Attendance is free, and registration remains open until 4 November 2025 at 23:59 GMT. Register now: Link in bio

19.10.2025 09:00 โ€” ๐Ÿ‘ 7    ๐Ÿ” 5    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Reclaiming microbiology: scientists as community members and advocacy leaders Microbiology Society journals contain high-quality research papers and topical review articles. We are a not-for-profit publisher and we support and invest in the microbiology community, to theโ€ฆ

To celebrate Black in Micro Week, the @blackinmicro.bsky.social have published a new commentary, Reclaiming Microbiology: Scientists as Community Members & Advocacy Leaders. Read the article: doi.org/10.1099/mgen... #MGen #BiM2025

15.10.2025 13:01 โ€” ๐Ÿ‘ 6    ๐Ÿ” 10    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Reclaiming microbiology: scientists as community members and advocacy leaders Microbiology Society journals contain high-quality research papers and topical review articles. We are a not-for-profit publisher and we support and invest in the microbiology community, to the benefi...

To celebrate and support the great @blackinmicro.bsky.social initiative and what joining could mean for you, please take a look through the commentary in Microbial Genomics @microbiologysociety.org hot off the press today! #MicroSky #MicrobiomeSky ๐Ÿ’ป๐Ÿงฌ๐Ÿงช๐Ÿฆ  www.microbiologyresearch.org/content/jour...

15.10.2025 08:28 โ€” ๐Ÿ‘ 14    ๐Ÿ” 12    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

๐Ÿ“ฃ Reminder of the below fully-funded PhD studentships in exposome immunology! Projects interfacing with other areas (e.g. the human microbiome) are also on offer. Please reach out if you have any questions.

Applications due 2 Dec 2025 ๐Ÿ“ฃ

10.10.2025 14:46 โ€” ๐Ÿ‘ 4    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Note it in your calendars! Aug 3-5, 2026. Excited to bring back MEEHubs to a hub near you (Switzerland, USA, Canada, Mexico, UK, Ukraine, or virtual only)โ€ผ๏ธ

07.10.2025 15:01 โ€” ๐Ÿ‘ 10    ๐Ÿ” 9    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
<i>Microbial Genomics </i> Deputy Editor-in-Chief: Call for Expressions of interest

After being with the journal since its very inception, the time has come for me to step back from Microbial Genomics. This is a wonderful opportunity to have a leadership role in one of the leading journals for microbial genomics research

microbiologysociety.org/news/society...

07.10.2025 08:43 โ€” ๐Ÿ‘ 26    ๐Ÿ” 24    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 1
Photograph taken from within a seated audience showing a screen with โ€˜EARLY CAREER MICROBIOLOGIST OF THE YEAR TALK FINALโ€™

Photograph taken from within a seated audience showing a screen with โ€˜EARLY CAREER MICROBIOLOGIST OF THE YEAR TALK FINALโ€™

Great science-filled afternoon at @microbiologysociety.org HQ watching finalists present at the Early Career Microbiologist of the Year Finals! All the speakers gave fantastic talks on a wide variety of subjects ๐Ÿฆ ๐Ÿงซ๐Ÿ”ฌ

07.10.2025 17:22 โ€” ๐Ÿ‘ 6    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Outreach and Engagement Grant Eligible members can apply for up to ยฃ1000 to support relevant science outreach or public engagement initiatives that engage new audiences in the art and science in any aspect of microbiology.โ€ฆ

Applications for Outreach and Engagement grant are closing tomorrow at 23.59 BST. Members can apply for up to ยฃ1000 to support relevant science outreach or public engagement initiatives. Check your eligibility and apply now: microb.io/OutreachandE....

30.09.2025 09:01 โ€” ๐Ÿ‘ 1    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Our fantastic @sheppardlab.bsky.social DPhil student Madison Goforth gives us a global overview of Campylobacter source attribution and the spread of AMR ๐ŸŒŽ๐Ÿ’Š๐ŸŒŽ #CampyUK2025 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk

25.09.2025 10:11 โ€” ๐Ÿ‘ 9    ๐Ÿ” 2    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Are antibiotics a dead parrot? ๐ŸฆœProf Aidan Taylor kicks off the โ€˜From farm to forkโ€™ session discussing Campylobacter AMR and vaccine development ๐Ÿงซ๐Ÿ’‰ #CampyUK2025 @microbiologysociety.org @ineosoxford.bsky.social @biology.ox.ac.uk

24.09.2025 13:22 โ€” ๐Ÿ‘ 8    ๐Ÿ” 3    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Another speaker sponsored by @microbiologysociety.org , Prof Sitara Ajjampur talks about age and exposure to infected poultry in backyard chicken flocks as determinants of Campylobacter infections in children in rural south India ๐Ÿ“๐Ÿ‡ฎ๐Ÿ‡ณ #CampyUK2025 @ineosoxford.bsky.social @biology.ox.ac.uk

24.09.2025 13:17 โ€” ๐Ÿ‘ 6    ๐Ÿ” 3    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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@sheppardlab.bsky.social collaborator Francesca Schiaffino, sponsored by @microbiologysociety.org explains patterns in persistent Campylobacter infections in LMICs, using data from Peru to investigate complex long-term carriage ๐Ÿ“๐Ÿ‡ต๐Ÿ‡ช #CampyUK2025 @ineosoxford.bsky.social @biology.ox.ac.uk

24.09.2025 12:48 โ€” ๐Ÿ‘ 6    ๐Ÿ” 3    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Fascinating talk from keynote speaker Dr Christine Szymanski about how Campylobacter jejuni has evolved to colonise and survive the breastfed infant gut #CampyUK2025 @ineosoxford.bsky.social @biology.ox.ac.uk

24.09.2025 10:11 โ€” ๐Ÿ‘ 7    ๐Ÿ” 2    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Our very own @sheppardlab.bsky.social DPhil candidate Amy Douglas representing the @ukhsa.bsky.social giving us some Campy stats ๐Ÿคฉ๐Ÿคฉ๐Ÿคฉ #CampyUK2025 @ineosoxford.bsky.social @biology.ox.ac.uk

24.09.2025 10:33 โ€” ๐Ÿ‘ 9    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
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And weโ€™re off! Excited for a day full of all things Campy. The Sheppard lab @sheppardlab.bsky.social welcomes everyone to CampyUK, the first conference in the new Life and Mind Building @ox.ac.uk

24.09.2025 09:45 โ€” ๐Ÿ‘ 7    ๐Ÿ” 2    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 0

Congrats Tabea! Very well deserved ๐Ÿฅณ

22.09.2025 07:39 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

โ€˜We identified clone-specific metabolic capabilitiesโ€ฆ that may contribute to the ecological success and dissemination of most prevalent ExPEC clonesโ€™

19.09.2025 13:29 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Yes! Jack and Lauren both gave excellent talks, you should be a very proud supervisor!

17.09.2025 10:28 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Amazing news Rachel! Very well deserved ๐Ÿ‘

16.09.2025 10:11 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

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