TADA! Simple guidelines to improve code sharing
🎉New preprint!
"TADA! Simple guidelines to improve code sharing"
tinyurl.com/8rmnwjrk
We present simple guidelines to help researchers of all coding levels improve the transparency and reproducibility of their analytical code, TADA!
Transferable, Accessible, Documented, Annotated.
02.08.2025 17:05 — 👍 100 🔁 53 💬 2 📌 3
We are doing a Hackathon! 💻 Together with senior editor @nhcooper123.bsky.social , we'll be discussing and testing a protocol to check whether published data/code is actually reproducible... (1/2)
31.07.2025 15:21 — 👍 39 🔁 23 💬 1 📌 2
Visual representation of tested hypotheses showing how urbanization can affect phenotypic variation at different population levels.
Last paper from my PhD at #EcolLett: dx.doi.org/10.1111/ele....
Using long-term data from European tit populations, we test three hypotheses to determine how urbanization affects phenotypic variation at different population levels.
#UrbanTitCollab #DiverCity #SPIBirds
25.07.2025 13:32 — 👍 27 🔁 8 💬 1 📌 1
Integration of pedigrees and methods for demographic inference in livestock population genomics
Demographic inference is a central tool for reconstructing the genetic history of a population. Recently, several new approaches have brought this tool into a new era, that of the exhaustive use of whole-genome sequence. These approaches can be divided into two categories: demographic inference based on ancestral recombination graphs (ARGs1) and deep learning based inference2,3. However, without any other source of information, it is difficult to assess the actual degree of accuracy of these methods. In the case of livestock species, we usually have access to an additional information, rather unique and valuable, the pedigree over several generations. This set of relationships makes it possible to compare inferred demographic histories with the exact, albeit incomplete, history of the population.In this thesis project, we aim to use the pedigree information on the one hand, to assess the results obtained with the new approaches of demographic inference, and, on the other hand, to refine methods for ARG estimation. Therefore, we propose a research program divided into three main tasks: (i) to appropriate new approaches (ARG, deep learning) in demographic inference on goat and sheep datasets, (ii) to compare these approaches together, in particular to evaluate their inference of the effective size of a population in the light of genealogical information, and (iii) to integrate this information into the inference of ARGs.Kelleher, J. et al. Inferring whole-genome histories in large population datasets. Nature Genetics 51, 1330–1338 (2019).Schrider, D. R. & Kern, A. D. Supervised Machine Learning for Population Genetics: A New Paradigm. Trends in Genetics 34, 301–312 (2018).Korfmann, K., Gaggiotti, O. E. & Fumagalli, M. Deep learning in population genetics. Genome Biology and Evolution 15, evad008 (2023).You will be welcomed in the CHAMADE team (“CHAracterization and MAnagement of Diversity”) of the GenPhySE research unit (https://genphyse.inrae.fr/), located in the Occitanie-Toulouse research centre (31320, Castanet-Tolosan). The CHAMADE team is part of the “Diversity and Selection” scientific division of the research unit. The team is interested in methodological issues in the field of population genomics, genetic evaluation of livestock species and quantitative and evolutionary genetics. On deep learning approaches for demographic inference, collaboration is also planned with the BioInfo team from the Laboratoire Interdisciplinaire des Sciences du Numérique (LISN, Paris-Saclay University).
PhD offer in our lab in Toulouse, France
"Integration of pedigrees and methods for demographic inference in livestock population genomics"
Supervision: Pierre Faux & Bertrand Servin
More information: jobs.inrae.fr/en/ot-25908
16.06.2025 13:45 — 👍 2 🔁 6 💬 0 📌 0
Dreaming of a postdoc adventure with earwigs? ✨ Dive into insect behavior, parental care, social immunity, population genomics, microbiota, ecotoxicology, and many other exciting topics! Got a crazy or just a vague idea for a postdoc project: Let's chat and make it happen! 🌟 #Postdoc #Europe #earwig
08.05.2025 19:53 — 👍 3 🔁 1 💬 0 📌 0
Wild to see our new pharmaceutical pollution and salmon migration paper in @science.org covered on @colbertlateshow.bsky.social!
Starts at 2:45 👉 www.youtube.com/watch?v=Cm4u...
Read the paper 👉 www.science.org/doi/10.1126/...
@jack-brand.bsky.social
18.04.2025 15:55 — 👍 16 🔁 7 💬 1 📌 0
🚨 ESEB 2025, here we come! 🚨
We're thrilled to announce our symposium:
"Enhancing Diversity & Transparency in Ecology & Evolution: Reliable Practices for Research & Organizations" 🌍✨
Featuring invited speakers:
🔹 Dr. Malgorzata (Losia) Lagisz
🔹 Dr. Joel Pick
📅 Aug 17-22, 2025 | 📍 Barcelona, Spain
18.04.2025 12:49 — 👍 31 🔁 15 💬 1 📌 2
Evaluating the effects of environmental disturbances and pesticide mixtures on N-cycle related soil microbial endpoints
First paper published in PCI in Ecotox and Env Chem, issued from the PhD of #Camilla_Drocco done in collaboration with #Anja_Coors from #ECT_Oekotoxikologie within the context of aristo.bio.uth.gr/index.php/ct... !
peercommunityjournal.org/articles/10....
16.04.2025 12:28 — 👍 2 🔁 1 💬 0 📌 0
Exactement, j'ai rejoint l'unité au 1er Janvier :)
15.01.2025 19:35 — 👍 0 🔁 0 💬 0 📌 0
Merci @jmeunierearwig.bsky.social ! 😉
04.01.2025 16:58 — 👍 0 🔁 0 💬 1 📌 0
I'm thrilled to share that I’ve just started a permanent position as a research scientist at the Bees & Environment unit @inrae-france.bsky.social !
I’ll be focusing on the transfers and effects of contaminants on wild bees 🐝.
#ecotoxicology #ecotox
#bees
Stay tuned for updates!
02.01.2025 14:36 — 👍 6 🔁 0 💬 2 📌 0
Logo for the 17th Ecology & Behaviour conference that will be hosted in Montpellier, France from August 11-15, 2025. The logo includes a black and white flamingo made up of other animals.
🚨SAVE THE DATE 🚨 The 17th Ecology & Behaviour is back at the CEFE!
Join us from August 11-15, 2025. Don't miss out!
Sign up here for updates: listes.services.cnrs.fr/wws/subscrib...
And, of course, follow us here! #ecobhvr2025
22.11.2024 13:34 — 👍 25 🔁 20 💬 1 📌 3
Megasete offshore solar farm, by SolarinBlue
We recruit a research engineer to examine the potential impacts of an offshore solar farm on biofouling communities and fish early life-stages, through fieldwork (monitoring and sampling) and experimental (ecotoxicology) approaches.
emploi.cnrs.fr/Offres/CDD/U... (in FRENCH)
13.12.2024 14:52 — 👍 3 🔁 2 💬 0 📌 1
Code-sharing policies are associated with increased reproducibility potential of ecological findings
In 2020, we showed that studies published in ecological journals WITH a code-sharing policy showed a 21% reproducibility potential at max (Culina et al 2020, @plosbiology.bsky.social)
We've now investigated journals WITHOUT a code-sharing policy. The results are worrying.
📰 doi.org/10.32942/X21...
10.12.2024 07:38 — 👍 86 🔁 37 💬 4 📌 2
Want to do a Marie Curie project on seabirds with us? We work on stressors, contaminants, physiology, aging, demography. Great fieldwork in Svalbard, Antarctica, French Guyana, France. Lab facilities (hormones, telomeres), biologging, long-term CMR program.
CEBC, France
@ecophycebc.bsky.social
08.12.2024 12:28 — 👍 15 🔁 10 💬 0 📌 0
Two days ago, I shared my story of having my identity stolen to publish fake peer reviews
The number of academics who have reached out with similar stories is shocking—impersonated in the same way, receiving AI-written reviews, reviewing AI-written articles, etc
www.science.org/content/arti...
05.12.2024 12:31 — 👍 25 🔁 11 💬 0 📌 1
Hi Diane, thank you for the great starter pack! Could you please add me as well? :)
26.11.2024 20:14 — 👍 1 🔁 0 💬 1 📌 0
Invasive Species; Biosecurity; Behavioural Ecology; Marine and Freshwater Science; Evidence Synthesis and Meta-Science (him/him/they/them)
NSERC postdoc fellow @ Univ Edinburgh
Evolutionary ecology, especially in cities
https://scholar.google.com/citations?hl=en&user=RQV7cXwAAAAJ
Post doctoral researcher at UMR METIS Sorbonne Université | Working on the impact of pollutants on host-parasites relationship 🐟🪱 | and on the impact of salinity on amphibians 🧂🐸
#DEBtheory is a theory specifying the metabolism of all life on earth. Stay up to date with research, applications, projects, courses, jobs and more!
Check us out at: https://www.bio.vu.nl/thb/deb/deblab/add_my_pet/
- PostDoc at the UoGlasgow.
- Interested in ageing and parental effects.
- Fond of burying beetles.
- R and Shiny enthusiast.
- Data editor at Ecology Letters.
- President of www.sortee.org
- Website: https://eivimeycook.github.io
Researcher in chemical ecology of plant-insect interactions @cefemontpellier @cnrs
Curation de contenu en entomologie liée à la plateforme Scoopit
➡️ https://www.scoop.it/u/bernadette-cassel
#arthropods #science #biology #ecology #biodiversity
#education #nature #environment #edusky #insects
📸 Haute-Loire (France)
Evolutionary ecologist into evolutionary theory, eco-evolutionary dynamics, evolution of genetic architecture and Drag Race 🏳️🌈 (he/him); Asst Prof @ UNIL
https://lab-mullon.github.io/index.html
Be the first to know about the launch of Contaminants, Environment, and Society, a new journal from @cdnsciencepub.com ▶️ https://ow.ly/SJkU50V7Bqt
Directeur UMR Agroécologie
Institut de recherche indépendant et associatif, situé en Ariège.
Independent interdisciplinary research lab, France.
Posts in FR/EN
Interests : Ecology / Physics / Science / Math / Arts
https://intp.science
L’ANR, l’agence française de la recherche sur projets. Opérateur de France 2030.
The French national research agency #ANR #AgenceRecherche #France2030
www.anr.fr
The Swiss National Science Foundation funds excellent research at universities and other institutions – from chemistry to medicine to sociology.
We invest in researchers and their ideas 🔬🌱📚 — www.snf.ch/en
Deutsch & Français: @snf-fns.ch
European Research Council, set up by the EU, funds top researchers of any nationality, helping them pursue great ideas at the frontiers of knowledge. #HorizonEU
Mediterranean Ecology Research Observatory for Practical Skills
Field studies organisation located in the south of France
Created by Dr Sophie Mowles and Dr Fabrizio Manco
https://merops.eu/
@sophiemowles.bsky.social
Postdoc at IGFL, ENS-Lyon.
Ecology-Evolution-Development
Nature Photography
website: https://arnaudbadiane.com/
Immunologist, passionate about science and communicating it ✨
Student at Univ. Lyon 1, in science communication
PhD student in neurosciences and cognitive sciences - stereotypes and social cognition - Chronic pain - amateur and passionate about ethics and philosophy of sciences
Research executive in psychiatry 🏥
#openscience #metascience #slowscience
(He/Him)
The International Society for Microbial Ecology is a non-profit association and owner of the ISME Journal and ISME Communications.
Next symposium #ISME20 in Auckland, New Zealand in August 2026.
PollinERA aims to reverse #pollinator population declines and reduce the harmful impacts of #pesticides
#HorizonEU project | #️⃣101135005
🌐 https://pollinera-horizon.eu/
