So excited to have this study live! Lead by @ee-reh-neh.bsky.social's teram and in collaboration with an incredible team at MRIN in Indonesia. This is the culmination of ~5 years of work including a ton of effort in the field. Really proud of how this came together!
www.biorxiv.org/content/10.6...
Our new collaborative work led by @taliamycota.bsky.social
Jiajun Cui & Emma Caullireau between my lab @ucllifesciences.bsky.social @cloeucl.bsky.social & the Karasov Lab (tkarasovlab.org) @uofubiology.bsky.social
and collaborators: @plantricia.bsky.social et al.
tinyurl.com/5yx2wmz5
(1/n)
Hot off the press! Our latest paper led by @fernpizza.bsky.social, understanding how plasmids evolve inside cells. These small, self-replicating DNA circles live inside bacteria and carry antibiotic resistance genes, but also compete with one another to replicate. 1/
www.science.org/doi/10.1126/...
NEW pub in @science.org 🥳
Is it sponges (panels A & B) or comb jellies (C & D) that root the animal tree of life?
For over 15 years, #phylogenomic studies have been divided.
We provide new evidence suggesting that...
🔗: www.science.org/doi/10.1126/...
Do you teach #rstats? Do your students complain about how lame and old-fashioned dplyr is? Don't worry: I have the solution for you: github.com/hadley/genzp....
genzplyr is dplyr, but bussin fr fr no cap.
🚨Our collaboration with @centriolelab.bsky.social & @gautamdey.bsky.social is out today in @cp-cell.bsky.social
We show that #Expansion #Microscopy is a broad-spectrum modality for Euks, enabling 3D phenotypic maps rooted to phylogeny.
#ProtistsOnSky #SciComm #SciSky
www.cell.com/cell/fulltex...
We selected the laziest mouse at each round to inoculate the next batch of germfree mice: over rounds of selection and passaging, behavior shifted without changes to the mouse genome: rdcu.be/eM3rO
🦠🧫
The gut MYCOBIOME is akin to the tiny group of kids in the corner of a huge homecoming dance. Their story is largely unknown. In our latest, @emilyvansyoc.bsky.social dives into the evolutionary associations of gut fungi with @erdavenport.bsky.social & Andres Gomez
journals.plos.org/plosbiology/...
What determines the human gut fungal community? @emilyvansyoc.bsky.social @erdavenport.bsky.social @symbionticism.bsky.social &co present the first #GWAS of human genetic loci that influence the abundance of gut #fungi, linking these to disease risk #mycobiome @plosbiology.org 🧪 plos.io/42bCKou
We published a new lane of research today on human gut fungi. Shout out to 1st author @emilyvansyoc.bsky.social sky.social & @erdavenport.bsky.social For 20 years, bacteria received the lion's share of interest in the human gut. Yet we know little about the gut mycobiome. doi.org/10.1371/jour...
The 2026 Probabilistic Modeling in Genomics (ProbGen) meeting will be held at UC Berkeley, March 25-28, 2026. We have an amazing list of keynote speakers and session chairs:
probgen2026.github.io
Please help spread the news.
Microbiology professor, want to join a slack for microbiology professors, any career stage, diverse career types (pure teaching, med school, R1, community college, pure research fed PIs, ...)
Message me for an invite link if you are interested.
No imposter syndrome, if you are 1% micro, join!
Our paper demonstrating that within-species warfare interactions are ecologically important on human skin is now published in Nature Micro! www.nature.com/articles/s41...
Job is up, consider joining us!
psu.wd1.myworkdayjobs.com/en-US/PSU_St...
Come to work with us!
We have 2 PhD positions:
1: On stability of gut microbiome in longitudinal well phenotyped adult cohorts:
tinyurl.com/MicrobiomeExpo…
2: On integrative multi-omics analysis in a unique longitudinal mother-infant cohort.
tinyurl.com/EarlyLifeOmics
Very proud of my graduate student Naomi Huntley for being selected to participate in this internship!
Sharing the most significant work from my group, led by the @evolvingstem.bsky.social team.
Come for the discoveries of how Pseudomonas adapts in biofilms, stay for the story of how they were discovered by thousands of young scientists in grades 9-12. 🧪🧫🧬🧵
www.biorxiv.org/content/10.1...
Opening for a #postdoc in the lab available immediately. Please spread the word.
DETAILS HERE: jobrxiv.org/job/baylor-c...
cc: #academicJobs #postdocJobs #microbiome #Celegans #organoids #IBD #PathSky #Medsky #AcademicSky 🧪 🧬 🦠
PICRUSt2-SC: an update to the reference database used for functional prediction within PICRUSt2 academic.oup.com/bioinformati... #jcampubs
🚨 I’m hiring a postdoc for Fall 2025 with experience in microbial ‘omics data analysis and phylogenetics/genomics. Projects will be centered around ancient microbial ecology & evolution. Click here for more information: bpb-us-e1.wpmucdn.com/wp.txstate.e...
Please share, thank you 🙏🏻
A poem for my last day working at the writing center for the semester (by Joseph Fasano)
It’s Thursday! Episode #91 of #MattersMicrobial is up. Dr. Emily Davenport of Penn State joins the #QualityQuorum to discuss how host genetics impacts the microbiome. Please spread the #GoodMicrobialWord! @microbe.tv @asmicrobiology @univpugetsound
youtu.be/5c7lxC1mHxk?...
Yesterday, the NIH R35 “Outstanding Investigator” grant to fund scientists in my lab studying antibiotic resistance was terminated for reasons not related to the content of the science, or any actions taken by me or members of my lab
Such bullshit. I’m so sorry you’re dealing with this
Yes, it's Thursday! Time for Episode 90 of #MattersMicrobial. Dr. Francisco Dini Andreote of Penn State joins the #QualityQuorum to discuss how the plant microbiome can be used in agriculture. Please spread the #GoodMicrobialWord. microbe.tv
youtu.be/krQGvMggA3Y?...
We have a starter pack! Follow along and DM if you are part of the OHMC and would like to be added:
go.bsky.app/7X9RRT2
Pennsylvania could lose $973 million due to federal health research cuts. Visit scienceimpacts.org to learn more. scienceimpacts.org
PhD Timeline xkcd.com/3081
