Lily Wang's Avatar

Lily Wang

@lilyminium.bsky.social

Science lead at Open Force Field. Core developer at MDAnalysis. Has never met an opossum.

134 Followers  |  119 Following  |  5 Posts  |  Joined: 13.11.2024  |  1.5748

Latest posts by lilyminium.bsky.social on Bluesky

Haha, I too made the mistake of getting into fountain pens and all I can say is, I had no idea stationery could be so fancy (and pricey!)

10.08.2025 06:17 โ€” ๐Ÿ‘ 7    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

๐Ÿšจ Deadline coming up!
๐ŸŽฏ Donโ€™t miss your chance to present at the #mdaUGM2025 โ€” abstract + travel bursary applications due July 15!

Meet the community, share your work, learn from others, and get support to attend.

๐Ÿ”— Info: www.mdanalysis.org/pages/ugm2025/

#MDAnalysis #OSS #MolecularDynamics #UGM

11.07.2025 13:06 โ€” ๐Ÿ‘ 3    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
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Matthew Thompson now presenting a live joint demo at the @omsf.io workshop showing the amazing work you can do by combining OpenFF, OpenFE, OpenADMET, and OpenFold!

09.05.2025 17:25 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Wow sounds amazing, congrats to your brother! Is that radish in the first pic? Look very delicate

21.04.2025 02:57 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
Preview
Expanded ensemble predictions of tolueneโ€“water partition coefficients in the SAMPL9 logโ€†P challenge The logarithm of the partition coefficient (logโ€†P) between water and a nonpolar solvent is useful for characterizing a small molecule's hydrophobicity. For example, the waterโ€“octanol logโ€†P is often us...

New paper from the Voelz Lab in @pccp.rsc.org! Goold et al. performed many parallel expanded ensemble free energy simulations on @foldingathome.org using GROMACS (@gromacs.bsky.social) with OpenFF 2.0 (@openforcefield.org) to make blind logP predictions in SAMPL9

doi.org/10.1039/D4CP...

19.03.2025 15:36 โ€” ๐Ÿ‘ 11    ๐Ÿ” 4    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

If you're working in ML and free-energy calculations for drug discovery, #Pacifichem 2025 is still accepting abstracts for another two weeks!

18.03.2025 07:10 โ€” ๐Ÿ‘ 0    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Toolkit Showcase: Prepare and run a protein-ligand simulation โ€” OpenFF Ecosystem documentation

A very common use case for our force fields is to simulate a protein-ligand system, using OpenFF parameters for the ligand and a protein-specific force field for the protein. Here's an example of how to set up and run a simulation like this:

docs.openforcefield.org/en/latest/ex...

#compchem

06.03.2025 14:41 โ€” ๐Ÿ‘ 4    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Job Board All OMSF positions are currently remote, and we generally accept applications worldwide. Some positions may be restricted to the United States. All positions require a valid work permit - OMSF has lim...

another open position! OpenADMET is looking for Research Software Engineers to help with some lifting. hit the jump to learn more!

omsf.io/community/jo...

28.02.2025 17:07 โ€” ๐Ÿ‘ 3    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Using machine learning in binding free energy calculations for drug discovery? Share your work at our #Pacifichem symposium CLH019 "Machine learning for calculation of accurate protein-ligand binding free energies for drug discovery"! Abstracts close April 2. pacifichem.org/scientific-p...

28.02.2025 05:31 โ€” ๐Ÿ‘ 4    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

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