Lily Wang's Avatar

Lily Wang

@lilyminium.bsky.social

Science lead at Open Force Field. Core developer at MDAnalysis. Has never met an opossum.

144 Followers  |  121 Following  |  7 Posts  |  Joined: 13.11.2024
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Posts by Lily Wang (@lilyminium.bsky.social)

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Happy Pi-thon Day to all those who celebrate! Had to mark the occasion of 3.14 in style…

07.10.2025 18:59 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

It’s quiet, fast, decent food options and lots of power points and seating. And only one shooting in recent history. Definitely not the worst!

13.08.2025 22:50 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Haha, I too made the mistake of getting into fountain pens and all I can say is, I had no idea stationery could be so fancy (and pricey!)

10.08.2025 06:17 β€” πŸ‘ 7    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

🚨 Deadline coming up!
🎯 Don’t miss your chance to present at the #mdaUGM2025 β€” abstract + travel bursary applications due July 15!

Meet the community, share your work, learn from others, and get support to attend.

πŸ”— Info: www.mdanalysis.org/pages/ugm2025/

#MDAnalysis #OSS #MolecularDynamics #UGM

11.07.2025 13:06 β€” πŸ‘ 3    πŸ” 2    πŸ’¬ 0    πŸ“Œ 1
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Matthew Thompson now presenting a live joint demo at the @omsf.io workshop showing the amazing work you can do by combining OpenFF, OpenFE, OpenADMET, and OpenFold!

09.05.2025 17:25 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Wow sounds amazing, congrats to your brother! Is that radish in the first pic? Look very delicate

21.04.2025 02:57 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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Expanded ensemble predictions of toluene–water partition coefficients in the SAMPL9 log P challenge The logarithm of the partition coefficient (log P) between water and a nonpolar solvent is useful for characterizing a small molecule's hydrophobicity. For example, the water–octanol log P is often us...

New paper from the Voelz Lab in @pccp.rsc.org! Goold et al. performed many parallel expanded ensemble free energy simulations on @foldingathome.org using GROMACS (@gromacs.bsky.social) with OpenFF 2.0 (@openforcefield.org) to make blind logP predictions in SAMPL9

doi.org/10.1039/D4CP...

19.03.2025 15:36 β€” πŸ‘ 11    πŸ” 4    πŸ’¬ 0    πŸ“Œ 1

If you're working in ML and free-energy calculations for drug discovery, #Pacifichem 2025 is still accepting abstracts for another two weeks!

18.03.2025 07:10 β€” πŸ‘ 0    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
Toolkit Showcase: Prepare and run a protein-ligand simulation β€” OpenFF Ecosystem documentation

A very common use case for our force fields is to simulate a protein-ligand system, using OpenFF parameters for the ligand and a protein-specific force field for the protein. Here's an example of how to set up and run a simulation like this:

docs.openforcefield.org/en/latest/ex...

#compchem

06.03.2025 14:41 β€” πŸ‘ 4    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
Job Board All OMSF positions are currently remote, and we generally accept applications worldwide. Some positions may be restricted to the United States. All positions require a valid work permit - OMSF has lim...

another open position! OpenADMET is looking for Research Software Engineers to help with some lifting. hit the jump to learn more!

omsf.io/community/jo...

28.02.2025 17:07 β€” πŸ‘ 3    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
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Using machine learning in binding free energy calculations for drug discovery? Share your work at our #Pacifichem symposium CLH019 "Machine learning for calculation of accurate protein-ligand binding free energies for drug discovery"! Abstracts close April 2. pacifichem.org/scientific-p...

28.02.2025 05:31 β€” πŸ‘ 4    πŸ” 1    πŸ’¬ 0    πŸ“Œ 1