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Andi Kautt

@akautt.bsky.social

evolutionary genomics; adaptation; speciation; behavior 🧬🐠🐭 Assist. Prof. at WashU in St. Louis Biology he/him

299 Followers  |  347 Following  |  7 Posts  |  Joined: 14.10.2023
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Posts by Andi Kautt (@akautt.bsky.social)


Screenshot of the COI Pond webpage: 

Upload your academic CV and generate a draft NSF Collaborators and Other Affiliations (COA) Form to submit with your NSF grant proposals.

COI Pond parses your CV to extract:
Coauthors of articles published, in the last 48 months
Collaborators on funded projects, in last 48 months
Past PhD advisees & your own PhD advisor(s)
Editorial roles, in last 24 months
After extraction, you can edit the draft COA form before downloading a final version (in xslx format) that you can submit to NSF.

COI Pond is a free tool* from Cevian Labs.

Screenshot of the COI Pond webpage: Upload your academic CV and generate a draft NSF Collaborators and Other Affiliations (COA) Form to submit with your NSF grant proposals. COI Pond parses your CV to extract: Coauthors of articles published, in the last 48 months Collaborators on funded projects, in last 48 months Past PhD advisees & your own PhD advisor(s) Editorial roles, in last 24 months After extraction, you can edit the draft COA form before downloading a final version (in xslx format) that you can submit to NSF. COI Pond is a free tool* from Cevian Labs.

Today we’re excited to announce a new product: COI Pond is a tool for faculty and grant staff that converts an academic CV into a draft NSF Collaborators and Other Affiliations (COA) Form. COA forms are tedious work, and COI Pond makes it a snap. Try it for free, here cevianlabs.io/coipond/start/ /1

24.02.2026 15:50 β€” πŸ‘ 14    πŸ” 5    πŸ’¬ 1    πŸ“Œ 2

Happy to share scHiCAR, an ultra-high throughout (millions of cells), low cost (5 cents/cell including NGS), and trimodal platform for integrated single-cell level analysis of mRNA, open chromatin, and 5-kb resolution looping with ground-truth data the same individual cell.

20.02.2026 02:51 β€” πŸ‘ 77    πŸ” 33    πŸ’¬ 0    πŸ“Œ 6
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Agouti integrates environmental cues to regulate paternal behaviour - Nature Expression of agouti signalling protein in neurons in the medial preoptic area is increased by group housing and negatively associated with care, and overexpression of Agouti reduces care and enhances...

Why are some males caring toward infants while others are neglectful or abusive? I'm so pleased to share work that my colleagues and I @princeton.edu have just published @nature.com (an explanatory thread to follow!) (1/8)

18.02.2026 17:05 β€” πŸ‘ 139    πŸ” 58    πŸ’¬ 9    πŸ“Œ 6
Musical termites? What happens when you let nature sing Host Chris Morgan interviews Dr. Diego Ellis Soto about his work to turn the movement and sounds of animals into music, combining science, technology, and music theory to reveal the hidden rhythms of ...

Over the moon to be featured on NPR’s The Wild with Chris Morgan 🎧✨🌍🎢

From turning animal & plant data into musicβ€”πŸ’ 🐜 🐦 🌿 β€”to educational programs

I also share how music + nature supported me through my cancer survivorship journey 🎻πŸ₯

πŸŽ§πŸ‘‡ www.kuow.org/stories/let-...

16.02.2026 03:49 β€” πŸ‘ 6    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0
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The first paper from the lab is now out in Science Advances: Multimodal social context modulates larval behavior in Drosophila
www.science.org/doi/10.1126/...
We find that fly larvae keep their distance to conspecifics in the absence of food, enjoy reading! @cbehav.bsky.social @uni-konstanz.de

02.02.2026 20:31 β€” πŸ‘ 80    πŸ” 35    πŸ’¬ 6    πŸ“Œ 0
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SLiM 5: Eco-evolutionary Simulations Across Multiple Chromosomes and Full Genomes Abstract. Evolutionary simulations of multiple chromosomes, even up to the scale of full-genome simulations, are becoming increasingly important in populat

Slim 5 can now simulate genomes with multiple chromosomes like autosomes, sex chromosomes, mitochondria and chloroplast dna academic.oup.com/mbe/article/...

03.02.2026 00:03 β€” πŸ‘ 93    πŸ” 34    πŸ’¬ 0    πŸ“Œ 0

Calling all OrthoFinder users!

We’ve just released GLADE, a tool to infer gene gains, losses, duplications, and ancestral genomes across a phylogeny.

GLADE runs directly on OrthoFinder results.
www.biorxiv.org/content/10.6...
github.com/lauriebelch/...

(1/10)

29.01.2026 12:07 β€” πŸ‘ 102    πŸ” 48    πŸ’¬ 1    πŸ“Œ 2
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Evolution of sensory systems underlies the emergence of predatory feeding behaviors in nematodes | PNAS Understanding how animal behavior evolves remains a major challenge, with few studies linking genetic changes to differences in neural function and...

How does evolution turn a harmless bacterial feeder into an active predator?
Our new study led by @marianneroca.bsky.social and published in @pnas.org explores how sensory systems were rewired to enable prey detection and predatory behaviour in nematodes.
www.pnas.org/doi/10.1073/...

🧡below!

29.01.2026 12:30 β€” πŸ‘ 49    πŸ” 24    πŸ’¬ 1    πŸ“Œ 1

New preprint from our group (collaboration with @sueyeonchung.bsky.social) showing that discriminating odor components within a complex mixture is constrained by neural sensitivity rather than background interference - likely due to sparse representations at the front end.

29.01.2026 14:10 β€” πŸ‘ 37    πŸ” 13    πŸ’¬ 1    πŸ“Œ 0
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New BGE paper: The Challenge of Getting High-Quality Genomes - Biodiversity Genomics Europe There are complex "upstream" challenges involved in generating high-quality reference genomes, essential for modern biodiversity research. Drawing on the practical experiences of the European Referenc...

✨ Let's celebrate a new BGE research paper! ✨ πŸ₯³
K. Reichel et al. wrote a paper about the challenges on generating high-quality reference genomes.

More information on our website πŸ‘‰ biodiversitygenomics.eu/2026/01/21/c...

21.01.2026 16:05 β€” πŸ‘ 14    πŸ” 8    πŸ’¬ 1    πŸ“Œ 0
Odor Sampling Bags Enable Reliable Delivery of Controlled Odor Concentrations Precise control of odorant concentration is essential for reliable olfactory research, yet existing odorant delivery methods often suffer from solvent interactions and dilution from ambient air, limiting stimulus consistency in olfactory research. We developed an odor sampling bag system using Nalophan plastic to create a closed headspace with air as the carrier medium, eliminating solvent-related variability and ambient air dilution. In two independent experiments, 15 trained panelists each rated the perceived intensity of seven concentrations of benzaldehyde and 2-heptanone using both gas-sampling bags and glass jars. Bags produced higher maximum perceptual intensities (p < 0.001) and greater test-retest reliability than jars (Experiment 1: r = 0.89 vs. 0.81, p < 0.001; Experiment 2: r = 0.86 vs. 0.72, p < 0.001). Notably, the two tested odorants showed different maximum intensities in bags (p < 0.001) but not jars (p = 0.85), suggesting bags better preserve odorant-specific concentration differences. Photoionization detector measurements confirmed stable headspace concentrations over time, comparable to industry-standard Tedlar bags. This cost-effective approach offers improved stimulus control for olfactory psychophysics research. ### Competing Interest Statement Joel D. Mainland serves on the scientific advisory board of Osmo Labs, PBC and receives compensation for these activities. National Institutes of Health, https://ror.org/01cwqze88, F32 DC020380, T32 DC000014, U19 NS112953, R01 DC017757, R01 DC021663

1/3 The humble glass jar is a workhorse in olfactory research, but comes w/ hidden problems:
- Unknown headspace concentration
- Concentration dilution by ambient air

These add noise to odor measurements.

Our preprint introduces something new, something bag.πŸ§ͺ @jmainland.bsky.social & Matt Andres

16.01.2026 20:29 β€” πŸ‘ 8    πŸ” 4    πŸ’¬ 1    πŸ“Œ 0

Registration for the 2026 NY Area Population Genetics meeting is now open, at events.simonsfoundation.org/e0mEoL?rt=8k.... Registration is free but required; if you are submitting an abstract, note that the deadline is *January 30th*.

14.01.2026 21:37 β€” πŸ‘ 27    πŸ” 18    πŸ’¬ 2    πŸ“Œ 0
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DDLS Research School Postdoc call 2026 Call for Academic and Industrial Postdoctoral Fellowships in Data-Driven Life Science 2026 Generic Description of the DDLS Postdoc Program The SciLifeLab and Wallenberg National Program for Data-Drive...

Hit me up if you'd like to apply to a Data-driven postdoc fellowship with me in Sweden. 2 year salary, excellent community. Deadline March 31. I have a project idea on reference bias vs pangenome, but keen on hearing ideas. Please share broadly.

www.scilifelab.se/data-driven/...

14.01.2026 12:31 β€” πŸ‘ 14    πŸ” 22    πŸ’¬ 0    πŸ“Œ 0

This is such sad news. So sorry to hear this

10.01.2026 15:56 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 1

With some trepidation, I'm putting this out into the world:
gershmanlab.com/textbook.html
It's a textbook called Computational Foundations of Cognitive Neuroscience, which I wrote for my class.

My hope is that this will be a living document, continuously improved as I get feedback.

09.01.2026 01:27 β€” πŸ‘ 584    πŸ” 237    πŸ’¬ 16    πŸ“Œ 10
Home | IAA25

The next crayfish world congress will be in New Orleans LA: www.iaa25.com

06.01.2026 21:01 β€” πŸ‘ 1    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0

Two new chapters from my free online book in human genetics out this weekend!
These complete Part 3 of the book, on human population structure and history:
3.3: Human prehistory [separate thread]
3.4: Ancient DNA: a genetic time capsule [this thread]
web.stanford.edu/group/pritch...

23.09.2024 21:48 β€” πŸ‘ 142    πŸ” 64    πŸ’¬ 4    πŸ“Œ 0
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Senior Lecturer/Associate Professor in Biodiversity The Department of Biology was established in 2010 through the merger of the Departments of Ecology, Cell and Organism Biology, Biological Undergraduate Education, and the Biological Museums. The depar

Come and join me and my colleagues at the Department of Biology, #LundUniversity in #sweden! We have am open position as Senior Lecturer/Associate Professor in Biodiversity.

Apply here no later than February 11 2026:

https://lu.varbi.com/en/what:job/jobID:848749/type:job/where:4/apply:1

20.12.2025 15:58 β€” πŸ‘ 77    πŸ” 117    πŸ’¬ 0    πŸ“Œ 1
Cartoon of paleogeographic, biogeographic, and phylogenetic history of an island plant radiation, and plots of hypothesized relationships between regional features and biogeographic rates.

Cartoon of paleogeographic, biogeographic, and phylogenetic history of an island plant radiation, and plots of hypothesized relationships between regional features and biogeographic rates.

New preprint modeling biogeo diversification of Hawaiian Kadua πŸŒ±πŸοΈπŸŒ‹

w/ @ca-naturalist.bsky.social @sswiston.bsky.social @fabiology.bsky.social @phylogeny.bsky.social Warren Wagner, Bruce Baldwin, Ken Wood @ninaronsted.bsky.social @fzapata.bsky.social

biorxiv.org/content/10.64898/2025.12.16.694722

31.12.2025 20:51 β€” πŸ‘ 31    πŸ” 19    πŸ’¬ 1    πŸ“Œ 0
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The collision of two genomes threatens global food security Human activity alters selection pressures and species' ranges, creating opportunities for hybridisation through secondary contact. Ancient hybridization has enabled adaptive radiation, but its role in...

Excited about our new preprint showing bidirectional adaptive introgression between invasive and native crop pests over ecological timescales www.biorxiv.org/content/10.6...

26.12.2025 11:21 β€” πŸ‘ 67    πŸ” 18    πŸ’¬ 1    πŸ“Œ 4

One dramatic advance in evolutionary biology over the past 20 years has been the empirically lead shift in thought, away from rigid species boundaries towards introgression being very common, much of it adaptive. The ramifications are still rippling out (e.g. in ConBio). Below is a nice addition:

26.12.2025 13:32 β€” πŸ‘ 20    πŸ” 4    πŸ’¬ 1    πŸ“Œ 0
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Do you love quantifying animal behavior as much as we do? We have just the tool for you! Presenting #OCTRON - a pipeline that helps you create rich annotation data and enables training of custom segmentation models. Have a look, particularly if you work with non-model / invertebrate organisms!

23.12.2025 19:52 β€” πŸ‘ 101    πŸ” 41    πŸ’¬ 7    πŸ“Œ 9
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I've slowly been reformatting notes from my population and conservation genetics course at Montana State University into a web bookβ€”a rough draft is now live here: elinck.org/popgen_conge...

22.12.2025 21:32 β€” πŸ‘ 131    πŸ” 61    πŸ’¬ 1    πŸ“Œ 0
Understanding Animal Behaviour | Ord Research Group

πŸ†“ Graphic novel about animal behaviour! Just the thing for teaching ethology!

www.ordlab.unsw.edu.au/understandin...

23.12.2025 01:02 β€” πŸ‘ 4    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
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Olfactory receptors: Making sense (and antisense) of monogenic expression Monogenic expression of odorant receptors (ORs) in individual sensory neurons is a hallmark of olfactory systems in insects and vertebrates. New studies highlight how transcriptional interference and ...

You could read my Dispatch, but only as a teaser for two brilliant papers from Bogdan Sieriebriennikov (Desplan lab) and Giacomo Glotzer (Kronauer lab), which you *must* read.

Olfactory receptors: Making sense (and antisense) of monogenic expression: Current Biology www.cell.com/current-biol...

15.12.2025 15:47 β€” πŸ‘ 7    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
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Multispecies pangenomes reveal a pervasive influence of population size on structural variation Structural variants (SVs) are widespread in vertebrate genomes, yet their evolutionary dynamics remain poorly understood. Using 45 long-read de novo genome assemblies and pangenome tools, we analyze S...

www.science.org/doi/abs/10.1...

14.12.2025 17:28 β€” πŸ‘ 17    πŸ” 12    πŸ’¬ 0    πŸ“Œ 2

Deadline for this post-doc position in my lab extended to Jan 11th!

12.12.2025 15:01 β€” πŸ‘ 8    πŸ” 18    πŸ’¬ 0    πŸ“Œ 0
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Cell Type-Specific Hormonal Signaling Configures Hypothalamic Circuits for Parenting Parenting behavior emerges from hormonally sensitive circuits, but how distinct circuit components are affected by, and contribute to, sex and state dependent changes in infant caregiving remains uncl...

New paper alert!!...🀩 Led by @blogeman.bsky.social, we identify how cell type-specific hormonal responses in the hypothalamus tunes parenting behavior in males and females 🐭🧠🍼. Highlights in thread πŸ‘‡ 1/6

www.biorxiv.org/content/10.6...

13.12.2025 14:01 β€” πŸ‘ 73    πŸ” 32    πŸ’¬ 1    πŸ“Œ 0
GEO Accession viewer NCBI's Gene Expression Omnibus (GEO) is a public archive and resource for gene expression data.

We did this for 10 brain regions in deer mice

www.ncbi.nlm.nih.gov/geo/query/ac...

13.12.2025 13:14 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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The inferred functional connectome underlying circadian synchronization in the mouse suprachiasmatic nucleus | PNAS Circadian rhythms in mammals arise from the spatiotemporal synchronization of ~20,000 neuronal clocks in the suprachiasmatic nucleus (SCN). Althoug...

Congrats KL Nikhil and collaborators on inventing MITE to map functional brain connections! Surprising take home: MITE reveals 5 cell types (based on their connectivity) in the mouse circadian clock which underlie the daily wave of gene expression. www.pnas.org/doi/10.1073/...

12.12.2025 22:53 β€” πŸ‘ 9    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0