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Marc Lensink

@marclensink.bsky.social

CNRS scientist computational molecular biology. Mostly talking about life, travel, science and board games, unless it's something else.

972 Followers  |  828 Following  |  299 Posts  |  Joined: 16.08.2023  |  2.1405

Latest posts by marclensink.bsky.social on Bluesky

Pour ceux qui s'intΓ©resseraient au paysage politique nΓ©erlandais fragmentΓ©

03.11.2025 19:27 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Bonjour! Masters students in France πŸ‡«πŸ‡·, we’ve got an internship for you, in collaboration with the French Embassy in London.

Aimed at students of computer science, statistics or bioinformatics.

Deadline: 7 December 2025

Find out more and apply:
www.ebi.ac.uk/about/jobs/i...

03.11.2025 10:59 β€” πŸ‘ 7    πŸ” 6    πŸ’¬ 0    πŸ“Œ 0
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This is quite a story: the US employed every strongarm tactic available, including personal threats against delegates and their families, to derail an agreement on reducing shipping emissions that was almost finalized. on.ft.com/47lq3dZ

03.11.2025 14:11 β€” πŸ‘ 1162    πŸ” 599    πŸ’¬ 34    πŸ“Œ 85
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Nighttime walks in the rain. Brussels. October 2025.

31.10.2025 23:55 β€” πŸ‘ 3    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0

Can't overstate how fucked up it is that unraveling what is arguably the greatest achievement in the history of humanity is now a motivating issue of one of the two dominant parties in the U.S.

31.10.2025 04:13 β€” πŸ‘ 9356    πŸ” 3377    πŸ’¬ 386    πŸ“Œ 169
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ladies and gentlemen...we got him

30.10.2025 19:10 β€” πŸ‘ 18080    πŸ” 3993    πŸ’¬ 176    πŸ“Œ 184

Saw him talk once pre-Nobel. You don't want to miss this

29.10.2025 00:02 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Just because this came up a few times recently

If you need to compare two or more ensembles (like RMSD for structures) we developed algorithms and code (ENCORE) to do just that

Similarity Measures for Protein Ensembles
journals.plos.org/plosone/arti...

ENCORE
journals.plos.org/ploscompbiol...

27.10.2025 08:00 β€” πŸ‘ 50    πŸ” 7    πŸ’¬ 0    πŸ“Œ 1
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Make boring great again: Dutch anti-populist’s plan to beat Wilders β€˜I’m not ordered to be the funniest or to make the craziest remarks,’ said Christian Democrat Henri Bontenbal.

After two chaotic years, this Dutch anti-populist's message of decency, stability and trust is suddenly resonating with voters.

27.10.2025 12:16 β€” πŸ‘ 86    πŸ” 26    πŸ’¬ 1    πŸ“Œ 0

REMINDER! One week left to apply for what (in my humble and somewhat biased opinion) is one of the best academic jobs on the planet! Come join our vibrant and collaborative community here at the @biozentrum.unibas.ch @unibas.ch πŸ§ͺ

27.10.2025 12:52 β€” πŸ‘ 15    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0

Very good news:

26.10.2025 08:54 β€” πŸ‘ 19    πŸ” 8    πŸ’¬ 1    πŸ“Œ 0
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Seeking work in a research group run by an ERC-funded researcher?

You can find more than 145 positions open for application on the #Euraxess website πŸ‘‰ buff.ly/ROwXHf6

#ChooseEurope #jobs #research

25.10.2025 11:30 β€” πŸ‘ 38    πŸ” 19    πŸ’¬ 0    πŸ“Œ 0

Eens hoor

24.10.2025 23:19 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Antarctic seep emergence and discovery in the shallow coastal environment - Nature Communications Researchers reveal widespread, newly formed seafloor seeps along Antarctica’s Ross Sea coast. Methane-rich flows alter local ecosystems and may influence warming. The drivers remain unknown, warrantin...

L’Antarctique commence a cracher du methane dans l’atmosphΓ¨re.
Et cette nouvelle devrait bien plus nous mobiliser qu’un larcin dans un grand musΓ©e parisien. www.nature.com/articles/s41...

22.10.2025 05:04 β€” πŸ‘ 268    πŸ” 206    πŸ’¬ 6    πŸ“Œ 10
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The whole picture | The Guardian Latest The whole picture news, comment and analysis from the Guardian, the world's leading liberal voice

The Guardian’s fierce independence means nobody tells us what we can or can’t say – so we’re free to report the whole picture. More than just news: we join the dots between what’s happening in America with the rest of the world.

Discover more at theguardian.com/thewholepicture

22.10.2025 10:30 β€” πŸ‘ 83    πŸ” 16    πŸ’¬ 7    πŸ“Œ 1

Love that game!

20.10.2025 18:09 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Love those animals in Terraforming Mars.
Also got Penguins later on, finishing with a whopping 27 points in animals alone!
For a clear win: 130 - 103 - 98.

#terraformingmars #fryxgames @strongholdgames #boardgames

20.10.2025 18:08 β€” πŸ‘ 9    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

We (@sobuelow.bsky.social) developed AF-CALVADOS to integrate AlphaFold and CALVADOS to simulate flexible multidomain proteins at scale

See preprint for:
β€” Ensembles of >12000 full-length human proteins
β€” Analysis of IDRs in >1500 TFs

πŸ“œ doi.org/10.1101/2025...
πŸ’Ύ github.com/KULL-Centre/...

20.10.2025 11:26 β€” πŸ‘ 89    πŸ” 37    πŸ’¬ 0    πŸ“Œ 0
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On an Arctic archipelago, frozen soil may preserve a hidden history of viruses Scientists are hunting for ancient RNA in Svalbard’s permafrost, hoping to shed light on the evolution of viral diseases

I am fascinated by how viruses evolve - and not just since #SARSCoV2 has shown us at the global stage how consequential virus evolution can be for us.
In my new story in @science.org I got to explore how researchers are probing deeper into the past with old RNA virus genome.
So a πŸ§ͺ thread…

18.10.2025 10:02 β€” πŸ‘ 218    πŸ” 78    πŸ’¬ 4    πŸ“Œ 5
PDB Cake!

PDB Cake!

Collage of PDB users

Collage of PDB users

RCSB PDB members at a software developer meeting at SDSC

RCSB PDB members at a software developer meeting at SDSC

RCSB PDB-Rutgers team for cake party

RCSB PDB-Rutgers team for cake party

Happy Birthday, PDB!
RCSB PDB is celebrating the announcement of the PDB archive #OTD in 1971.

20.10.2025 17:11 β€” πŸ‘ 19    πŸ” 3    πŸ’¬ 1    πŸ“Œ 0
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Source : Jerem
#Louvre

20.10.2025 08:04 β€” πŸ‘ 193    πŸ” 40    πŸ’¬ 3    πŸ“Œ 0

Already looking forward to the movie

20.10.2025 17:36 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
A slide with the following text: Creation of poctographic tools for the transmission of complex ideas. HOW TO DEPICT PIE? By OcΓ©ane Juvin

A slide with the following text: Creation of poctographic tools for the transmission of complex ideas. HOW TO DEPICT PIE? By OcΓ©ane Juvin

We had a full day of very inspiring talks in our second workshop of the PIE consortium. PIE stands for Protein Interaction Evolution. Not all talks were scientific. Communication is an important aspect of science, especially multidisciplinary science. #cdp #ulille #universitedelille #france2030

18.10.2025 15:27 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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We affronted our first bandits in Gloomhaven. Got some hefty pay in the end. Twice! Nothing wrong being paid twice for the same job.

15.10.2025 14:53 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Biomolecular Interaction Prediction in the Pre‐ and Post‐AlphaFold Era: The 8th CAPRI Evaluation We report on the 8th CAPRI Evaluation period, capturing the assessment of CAPRI Rounds 47 to 55 (excluding the CASP and COVID-related Rounds), which have witnessed the transition to AI-driven predict...

🧬 New paper out from our Computational Molecular Systems Biology team at @UGSF-lille !
Proud to have contributed to the CAPRI 8 challenge

πŸ”— Read it here: onlinelibrary.wiley.com/doi/10.1002/...

#CAPRI8 #AlphaFold #ProteinStructure #StructuralBiology #AIinBiology #Bioinformatics #UGSF

06.10.2025 11:47 β€” πŸ‘ 5    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
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Excited to share our new preprint β€œUnified Sampling and Ranking for Protein Docking with DFMDock” by PhD candidate Lee-Shin Chu and Post-Doc Sudeep Sarma! We designed a diffusion docking model that samples rigid-body conformations by predicting forces and ranks poses using predicted energies.

08.10.2025 18:27 β€” πŸ‘ 7    πŸ” 4    πŸ’¬ 2    πŸ“Œ 0

Today is a day when arts degrees are worthless, but the product of those degrees is so valuable it would kill an entire industry if they were made to pay for it.

08.10.2025 10:29 β€” πŸ‘ 26627    πŸ” 10114    πŸ’¬ 426    πŸ“Œ 185
Application – EMBL International PhD Programme

A reminder that the PhD program for EMBL is open for winter recruitment round. If you want to understand life at a molecular level and have a quantitative science (you don't have to have done biology - we love our mathematicians/physcists/chemists!) apply www.embl.org/about/info/e...

09.10.2025 04:51 β€” πŸ‘ 34    πŸ” 44    πŸ’¬ 1    πŸ“Œ 0
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The 4th edition of the Integrative Structural Biology Meeting (#BSI), co-organized with the Association FranΓ§aise de Cristallographie (#AFC) and the SociΓ©tΓ© FranΓ§aise de Biophysique (#SFB) will be held in Bordeaux 15th-19th of December 2025. Scientific […]

[Original post on fediscience.org]

08.10.2025 11:53 β€” πŸ‘ 1    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
Located only 8,000 light years away, the Wizard nebula, featured here, surrounds developing open star cluster NGC 7380. Visually, the interplay of stars, gas, and dust has created a shape that appears to some like a fictional medieval sorcerer. The active star-forming region spans 100 about light years, making it appear larger than the angular extent of the Moon. The Wizard Nebula can be located with a small telescope toward the constellation of the King of Aethiopia (Cepheus). Although the nebula may last only a few million years, some of the stars being formed may outlive our Sun.

Located only 8,000 light years away, the Wizard nebula, featured here, surrounds developing open star cluster NGC 7380. Visually, the interplay of stars, gas, and dust has created a shape that appears to some like a fictional medieval sorcerer. The active star-forming region spans 100 about light years, making it appear larger than the angular extent of the Moon. The Wizard Nebula can be located with a small telescope toward the constellation of the King of Aethiopia (Cepheus). Although the nebula may last only a few million years, some of the stars being formed may outlive our Sun.

#APOD Astronomy Picture of the Day

NGC 7380: The Wizard Nebula

Credit: Nevenka Blagovic Horvat & Miroslav Horvat

www.star.ucl.ac.uk/~apod/apod/a... πŸ§ͺπŸ”­

08.10.2025 13:24 β€” πŸ‘ 296    πŸ” 58    πŸ’¬ 3    πŸ“Œ 2

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