I like the Descriptor-based registration (3d + t) by Stephan Preibisch for this kind of job. Ships with Fiji, under Plugins > Registration
Unspecific binding of secondary antibody aggregates π¬
ππ π°πΆππΆπ»π΄ ππ²ππ²πΉπΌπ½πΊπ²π»ππ πΆπ» π πΆπ°πΏπΌππ°πΌπ½π π₯π²π½πΌπΏππΆπ»π΄! If you're involved in creating, processing, or publishing microscopy data, take a look at the new checklist for reporting requirements provided by @quarep-limi.bsky.social in @jcb.org π rupress.org/jcb/article/...
Woohoo! So looking forward to the next iteration. π€©
Get in touch if you want to be paid to work with us this summer. We are particularly interested in hearing from scientists who are interested in software development!
π£ Registration for the #EuroBioImaging Image Data Community Days is open! Join us for online event centered on bioimaging & preclinical imaging data.
ποΈ April 13-17, online
All are welcome!
Register here ‡οΈ
www.eurobioimaging.eu/events/image...
Bloodstream-associated Salmonella Typhimurium and Enteritidis iNTS pathovariants hyper-replicate in human macrophages https://www.biorxiv.org/content/10.64898/2026.01.28.702237v1
Please see below. York is one of these sites, enabling everything from the basics to some of the most advanced microscopy applications
Sometimes thereβs only one thing that hits the spot: homemade cheesy garlic bread.
We are hosting an #Ilastik workshop on March 27th, led by Dominik Kutra, senior research software engineer @ilastik-team.bsky.social
The course is open to students and staff at @crick.ac.uk and partner universities (@ucl.ac.uk, @kingscollegelondon.bsky.social and @imperialcollegeldn.bsky.social)
We Are hiring!! π¨βπ»π©βπ» CALM's new Data and Systems Steward Role is live πhttps://crick.wd3.myworkdayjobs.com/External/job/London/Data-and-Systems-Steward_R2551 closing date 8th Feb!
<25% of #data professionals are women - not great!
If you are a woman interested in retraining in #bio #DataScience, our #IWD #Scholarship may be for you. This award gives you access to all our courses, peer-to-peer support & mentorship. Deadline: 20/02.
www.liverpool.ac.uk/computationa...
βΌοΈAttention - we are #hiringβΌοΈ
We're looking for a new Computational Biology Data Scientist al (post PhD or equivalent). Join our team :) we have a wonderful environment and work with very exciting #science. Deadline 10/02
tinyurl.com/699c6b95
#jobs
Working with chorioallantoic membrane (CAM) models? Check out CAMCON26, an unmissable event in the city to be, Liverpool! www.liverpool.ac.uk/research/fac...
Congratulations!
How many papers in do you give up?
Our #CellLineOfTheWeek is dystrophin - illuminating a protein often involved in muscle movement! πͺ
Our cell lines & plasmids are available for just the cost of shipping to lower the barriers to scientific discovery.
π¦ Distributed by @coriellinstitute.bsky.social and @addgene.bsky.social
It's that time of year: shiny.research.sfu.ca/u/rdmorin/sc...
What a delightful mess π€π
π€π΅π»π¬π¬π¬π¬
Workstation Henrietta in @cci-liv.bsky.social working hard doing my bidding.
Numpy is shorter than napariβ¦..
β¨New Year's resolutions involve learning something new?β¨
Then apply for our βIntroduction to Image Analysisβ workshop in Cardiff in May 2026! Deadline for applications is January 16th.
πβ¬οΈ
www.rms.org.uk/rms-event-ca...
@royalmicrosoc.bsky.social @david-j-barry.bsky.social @martinjones.bsky.social
β¬οΈβ¬οΈβ¬οΈ This is a great opportunity to learn from the best about how to apply AL/ML to microscopy images. Applications open!
We're a bit late in ringing in the giving season, but it is indeed upon us. Enjoy our special edition holiday logo βοΈ and, if you can spare a bit and appreciate napari, please donate to our development efforts! π CZI will match donations up to $75K.
opencollective.com/napari/donate
It is some wondrous stuff. Try it and see what happensβ¦
Congratulations!
Come on, do it. You know you want to. β¬οΈ
If you or your trainees are just getting started with image analysis of cells & are #CellProfiler -curious, here is a fairly thorough walk-through demo I did recently. Loading files, extracting metadata (fun with Regex!), identifying objects, measuring, filtering, QC, exporting:
youtu.be/fO5nJdhj_7I
Do you have 2D-to-3D image registration challenges? Let me know about them here
forum.image.sc/t/toward-bet...
No CBIAS would be complete without an image analysis workshop! Thanks Rocco, @giuliapaci.bsky.social and @makaefer.bsky.social for organising, we had fun helping out with teaching π¬π»
Also, massive thanks to further trainers @lankylaste.bsky.social Joost de Folter, Ana Stojiljkovic, Cameron Shand
