Go look at our #data
Free and #FAIRsharing.
144 studies, 10,244 human participants and > 135,000 samples.
#systems #immunology
@immportdb.bsky.social
#IDsky #immunesky
Check our #analysis tools at immunespace.org
immport.org/resources/hipc
Yeah! All 10 campuses of the @UofCalifornia are now considered R1 research institutions!
Great new article showcasing how researchers across @UofCAHealth are using @UofCalifornia Health Data Warehouse to study endometriosis, glaucoma, rare disease, cirrhosis, and more! Includes the work of @ManishButte @msirota84 @DrJonWatanabe and many others! bit.ly/4h5lmrh
So awesome! “Daily ferry service is sailing toward Mission Bay.” Imagine commuting directly to @UCSF Mission Bay via high-speed zero-emissions boat! Scheduled to begin service in 2027. Now all we need is service to the South Bay! 😊
www.ucsf.edu/news/2025/01...
Use my starter pack to add about 90 accounts to follow in science, #AI, bioinformatics, and clinical informatics! go.bsky.app/97wmgsZ
Thinking of and praying for my friends, family, and colleagues in and around Santa Monica and @UCLA @UCLAHealth during these terrible fires…
Whoa!! @HHSGov drops 125 page HIPAA update for comments: "update[s] HIPAA Security Rule for the first time since 2013"!
www.hhs.gov/hipaa/for-pr...
Join us for Post-Doctoral projects at @atulbutte.bsky.social on a newly funded FDA project on real-world analysis of onco-therapies! If you have a passion for epidemiology, causal inference, LLMs & scientific rigor, we'd love to hear from you. Please DM me. Spread the word. Thank you.
I often wish the default iPad on screen keyboard had arrow keys to navigate in text…
2024 saw another record for bioRxiv postings. Thanks to all the CSHL staff, affiliates, authors, funders, and everyone who advocates for the project. Happy New Year and #letsmakethisthenorm ! 🧪
I have a colleague (not on social media) who likes to say that works don't *fall* into the public domain, they *ascend* into the public domain. I really love that.
This ad seemed so hard to believe back in 1999… "all rooms have every movie ever made in any language anytime, day or night."
Whoa! In @NEJM_AI:
A Multimodal Biomedical Foundation Model Trained from 15 Million Image–Text Pairs… fully open-access foundation model!
ai.nejm.org/doi/full/10....
Folks moving back to California!
“California nets large population increase in 2024 — nearly returning to pre-pandemic level”
https://buff.ly/4fxlMVs
A great job for someone, for certain.
But I am re-posting this because this photo of the Geisel (of Dr. Seuss fame) Library at UC San Diego is a reminder of the twinned seriousness and surreality of my undergraduate education there--and the (re)imagining and (re)visioning it made possible for me.
Great! @UCSD Biomedical Informatics is recruiting new tenure-track faculty!
Assistant Professor https://buff.ly/49LX6rf ; Associate or Full Professor
$1 million dollars up for grabs from @NIH for the teams that come up with the best measures of research data sharing, also known as a Data Sharing Index (S-index)! www.freelancer.com/contest/nih-... HT @michaelfchiang.bsky.social
“When a measure becomes a target, it ceases to be a good measure." - Goodhart’s Law
en.m.wikipedia.org/wiki/Goodhar...
Here's a website that describes the NIH "s-index challenge" to promote data sharing by developing a robust metric to identify exemplary data sharers.
National Eye Institute is excited lead a large group of participating NIH institutes (shown on website).
www.freelancer.com/contest/NIH-...
There’s a lot to unpack in the Bipartisan House Task Force Report on AI. It’s clear that progress will require collaboration to ensure a healthy evaluation/adoption pipeline.
Glad to see @ucsdhealth.bsky.social’s work in sepsis AI highlighted in this report.
Link: www.speaker.gov/wp-content/u...
This took more than 10 years to get published! 😜
After nearly 15 years since its publication, #MANTRA (the tool for drug repositioning I designed during my PhD in Diego di Bernardo's lab at TIGEM) still goes strong! @atulbutte.bsky.social and colleagues using it for drug repurposing in skin inflammation here 👇 👍
www.science.org/doi/10.1126/...
Woah! New Microsoft python packages convert from Office documents into Markdown! github.com/microsoft/ma...
Excited to share our latest paper evaluating large language models in assessing oncology radiology reports. Led by superstars Travis Zack and CPH student Li-Cheng Chen!
@atulbutte.bsky.social
Annotated reports included
@ucsf-bcshi.bsky.social @ucsfcancer.bsky.social
ascopubs.org/doi/10.1200/...
Very cool! One genomic test can diagnose nearly any infection! Comes out of the lab of Charles Chiu @ucsfhealth.bsky.social
www.ucsf.edu/news/2024/11...
Welcome to @bsky.app !
Whoa… @Snowflake expanding into Menlo Park?
"The 773,000 square feet that Snowflake subleased from @Meta is enough office space for 3,000 to 3,800 workers."
https://buff.ly/3CSJq15
