Melody Parker

Melody Parker

@melodyjp101.bsky.social

Bioinformatician/DPhil student at the University of Oxford. Optimising direct-from-clinical-sample nanopore sequencing for pathogen identification and antimicrobial resistance prediction. - Bacterial AMR outbreaks, MGEs - Respiratory virus diagnostics

109 Followers 314 Following 3 Posts Joined Nov 2024
2 weeks ago
Preview
Clinical validation of a novel metagenomic nanopore sequencing method for detecting viral respiratory pathogens: diagnostic accuracy study Background Clinical metagenomics (CMg) offers high-throughput respiratory pathogen detection with a wider range than targeted, probe-dependent diagnostics. Sequencing cost and the challenges of high h...

New preprint from us @modmedmicro.bsky.social where we validate the diagnostic accuracy of a metagenomic nanopore sequencing method for respiratory RNA viruses.

www.medrxiv.org/content/10.6...

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3 months ago
Preview
A Novel Prognostic Metric Resolves the MYCN enigma in Silico and Points to a Biosynthetic Regulatory Shift Driven by MYCN Amplification in Neuroblastoma Neuroblastoma (NB) is the most common extra-cranial solid tumour in children. Although MYCN amplification is typically indicative of a poor prognosis, the expression level of MYCN has a non-monotonic ...

πŸ”Ή Favourable outcomes in MYCN-amplified tumours require very high biosynthesis and ATM signalling β€” rarely achievable biologically.

Read here: biorxiv.org/content/10.1...
#neuroblastoma #modelling #cancerresearch

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3 months ago

We propose:
πŸ”Ή The p53/MYCN ratio is a superior prognostic metric to MYCN alone in neuroblastoma.
πŸ”Ή MYCN drives biogenesis, but amplification or co-mutations trigger a shift that lowers p53/MYCN β†’ worse outcomes.
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3 months ago

5 years ago, my MSc project with @insigneoinstitute.bsky.social modelled the MYCN–MDM2–ARF–p53 network in neuroblastoma. That work has evolved into a full study!

The preprint by Matteo et al. explores the MYCN enigma β€” why MYCN amplification predicts poor prognosis, but overexpression alone doesn’t

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10 months ago

Delighted to share that the revised version of this work on the genetic basis of infertility is now out in @naturegenet.bsky.social ! Give it a read and let us know what you think - rdcu.be/ehEgG πŸ§¬πŸ’»

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