pasta: Pattern Analysis for Spatial Omics Data
Spatial omics assays allow for the molecular characterisation of cells in their spatial context. Notably, the two main technological streams, imaging-based and high-throughput sequencing-based, can gi...
Interested in spatial statistics for spatial omics data? Check out our new resource: pasta.
We show how different technologies lead to different data modalities give and overview of point-pattern and lattice-based spatial analysis. Feedback welcome!
arxiv.org/abs/2412.01561
04.12.2024 12:14 β π 17 π 7 π¬ 1 π 1
I'm feeling pretty excited to have a month off over xmas relaxing at the beach.
I just realised this morning that that month off starts in two weeks! There is no way I'm going to be able to leave my laptop at home this year :(
04.12.2024 20:26 β π 4 π 0 π¬ 2 π 0
PhD scholarship in bioinformatics - Flinders University
Reupping this since the explosion in members here.
Iβm looking to recruit PhD candidates to work with me in #Bioinformatics and thr human #microbiome Details π Please share π
www.flinders.edu.au/scholarships...
28.11.2024 05:23 β π 36 π 44 π¬ 0 π 0
Kicking off our Bluesky life by announcing our Statistical Bioinformatics Seminar Judith & David Coffey Invited Speaker. Mon 25/11 Professor Stephen Leslie, Indigenous Australian genomes show deep population structure and abundant novel variation. Online and @ USyd spds.sydney.edu.au/event/specia...
21.11.2024 02:57 β π 3 π 2 π¬ 0 π 0
Amazing #BiocAsia2024 event! Thanks to all who participated!
Looking forward to next year!
@bioconductor.bsky.social
11.11.2024 08:19 β π 12 π 3 π¬ 0 π 1
Had such a great time at EuroBioC2024, awesome talks and met some amazing people! Definitely keeping an eye on #EuroBioC2025!
@bioconductor.bsky.social #Bioconductor #Bioinformatics
19.11.2024 20:06 β π 10 π 2 π¬ 0 π 0
Ellis' learning of the day. The base R pipe has a placeholder!
link = " is "
link |> paste("Ellis", "dumb", sep = _)
[1] "Ellis is dumb"
19.11.2024 05:47 β π 1 π 0 π¬ 0 π 0
Cool sticker!
17.11.2024 20:43 β π 1 π 0 π¬ 0 π 0
Academic writing β get utilized to it.
14.11.2024 12:49 β π 343 π 74 π¬ 11 π 7
Pro-tip for anyone that attended COMBINE yesterday... You can make your name tag double-sided by slotting your COMBINE name tag into the ABACBS name tag. Saves the awkward flick of the name tag when you introduce yourself to someone new! #abacbs23 #abacbs2023
04.12.2023 21:01 β π 1 π 0 π¬ 0 π 0
Good morning Brisbane! #ABACBS23 #ABACBS2023
04.12.2023 19:30 β π 9 π 0 π¬ 0 π 0
Bioinformatics wisdom of the day:
When there are too many methods for the same task, you know that none of them is very good.
15.11.2023 10:57 β π 20 π 3 π¬ 0 π 0
Melbourne Integrative Genomics (MIG) is an interdisciplinary initiative of the University of Melbourne.
https://sites.research.unimelb.edu.au/integrative-genomics
Research Scientist, Immunology, Infection and inflammation (Sydney Uni, CPC). High-dimensional spatially resolved biology.
Associate Professsor @upf.edu. Computational genomics R/Bioc developer. Innate curiosity. Views my own. He/him, vi/vim. Mastodon: @robertclab@genomic.social. Twitter: @robertclab
Postdoc at NYGC and WCM in love with single-cell multiomics, immunology, hematology, data science. I care about open science and education
Professor of Physics, Photonics. University of Sydney, currently Pro-Vice-Chancellor (Research). Co-Director of NSW Smart Sensing Network. Contributing leading edge research to sovereign capability. Editor-in-Chief of APL Photonics
Bioinformatics & data scientist | PhD in Bioinformatics | Solving biological challenges with data.
Scientist. Evolution, Comp. Biol. 3DBioinfo. ISCB Function COSI. Also singer & composer. A π₯, π₯,πββοΈ, π lover. A proud mom. Http://www.bioinfocb.es
Clinical Geneticist, Genomics, Big Data and AI in Medicine Enthusiast
R-Ladies Sydney is part of a worldwide organisation promoting gender diversity in the R community. #rstats
https://www.meetup.com/en-AU/rladies-sydney/
Lecturer in Biotechnology at Swinburne University of Technology focusing on plant and microbial systems.
Associate Professor of Behavioural Science, University of Sydney. Deputy Director, Sydney Health Literacy Lab. Chief Editor, Health Literacy & Communication Open. Risk communication, medical decision making, health literacy, science translation.
Microbiome epidemiology | Bacterial Pathogens | Genomics | Postdoctoral Microbial Bioinformatician at The Baker Institute (Australia) π§π·π¦πΊ π§«π»
BSc in Biology, MSc student in Bioinformatics. Learning programming and systems biology. Lab tech. Molecular biology nerd. π±π¬π§¬π»π¨π΄
| Assistant Professor | DataScientist | BiomedicalEngineer | @UVABME alum at @HopkinsMedicine #Neurology Opinions are my own she/her
Lecturer at the University of Sydney, Australia. ΰ΄Άΰ΅ΰ΄°ΰ΅ΰ΄¦ΰ΅ΰ΄΅ΰ΄Ώ's Dad. I work in the junction between SE and CySec. Interested in Program Analysis, Mutation Analysis, Repair, Grammar Inference, Generation and Parsing
https://rahul.gopinath.org
Instructor/designer online maths courses, works at USyd
Binfie π§¬π©π½βπ» - Sydney Informatics Hub π¦πΊ
Currentππ³οΈ π³οΈ: linux, nextflow, scRNA, phylogenetics, OOP/pygame
Senior Lecturer, ABI Communication Lab, The University of Sydney | Convenor, Digital Health & Informatics Network (DHIN) | Associate Editor, Brain Impairment | Super interested in all things π§ π± π£οΈ ππΌοΈ #bskySPEECHIES | Kuring-gai/Bundjalung Country
Research, campus life and all things #USYD!
Leadership for good.
CRICOS: 00026A
TEQSA: PRV12057
