@jwlambert.bsky.social
Software Engineer @ LSHTM π¨πΌβπ», ex evolutionary biologist πΈπ§¬
Fun project with @evoisland.bsky.social, @theoevobio.bsky.social, Lizzie Roeble and Rampal Etienne from my @unigroningen.bsky.social PhD days, out now in MPE.
17.03.2025 16:57 β π 0 π 0 π¬ 0 π 0What should the early lines of code written during a new outbreak look like? We've got a new viewpoint piece in Lancet Digital Health on how to improve early outbreak analytics, with a great group of contributors: linkinghub.elsevier.com/retrieve/pii...
10.01.2025 10:54 β π 38 π 12 π¬ 1 π 4
Want to easily simulate plausible outbreak data for tutorials or testing methods? {simulist} is now on CRAN! epiverse-trace.github.io/simulist/ind...
β³ Delay distributions
π₯ Population-wide or age-stratified risks
π Age-structured populations
π Time-varying CFR
π Vary case types and contact tracing
Links to DAISIE and DAISIEprep R packages:
- github.com/rsetienne/DA...
- github.com/joshwlambert...
Pre-print: www.biorxiv.org/content/10.1...
The perks of visiting a Natural History Museum π¦
24.12.2024 11:26 β π 0 π 0 π¬ 1 π 0
Amazing couple of days visiting @naturalis.bsky.social with @evoisland.bsky.social! Working on open-source software for island biogeography.
24.12.2024 11:26 β π 4 π 0 π¬ 1 π 0
Non-homogenic lineage diversification models are the way to go, and Tianjian is taking a first step towards more realistic diversification models like those. Great read!
www.sciencedirect.com/science/arti...
Photos of research group meetings and data collection
Previous papers published by MRC LID PhD students - you can also search Kucharski/Lowe/Hodgson on Google Scholar
Come do a PhD with us at @lshtm.bsky.social! We're advertising two projects:
Understanding and predicting vector-borne epidemics (with Rachel Lowe): mrc-lid.lshtm.ac.uk/2025-26-proj...
Kinetics of immunity to influenza and SARS-CoV-2 (with @dchodge.bsky.social): mrc-lid.lshtm.ac.uk/2025-26-proj...
