Andres Floto

Andres Floto

@andresfloto.bsky.social

Prof. of Respiratory Biology & Co-Director Cambridge Centre for AI in Medicine, U of Cambridge. Studying Bacteria, Innate Immunity & Antibiotic Discovery, CF/Bronchiectasis/NTM using genetics & ML

227 Followers 178 Following 1 Posts Joined Nov 2024
1 month ago
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🎥 Professor @andresfloto.bsky.social
on new funding from: @wellcometrust.bsky.social @gatesfoundation.bsky.social @novonordisk.bsky.social and how VPD-HLRI research is helping reshape antibiotic discovery in the fight against antimicrobial resistance.

Read more:
🔗 bit.ly/4rJy6c2

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1 month ago
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Defining Permissive Chemical Space in Klebsiella pneumoniae Andres Floto with Vitor Mendes, David Spring, Aaron Weimann, Sebastian Bruchmann, and José Miguel Hernández Lobato of the University of Cambridge in the United Kingdom will experimentally define the f...

Many congratulations to @andresfloto.bsky.social and team for their success in the @gatesfoundation.bsky.social @wellcometrust.bsky.social Novo Nordisk Foundation Grand Challenge for Innovations in Gram negative antibiotic discovery:
gcgh.grandchallenges.org/grant/defini...

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1 month ago
This is figure 1, which shows that ASCT enables high-throughput assessments of bacterial viability.

A paper in Nature Microbiology presents Antimicrobial Single-Cell Testing, a large-scale live-cell imaging approach that quantifies bacterial killing in real time at single-cell resolution, which can predict treatment outcomes. go.nature.com/3Nwnez8 #microsky 🧪

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3 months ago
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Bacteria can control what enters their cells, balancing energy and blocking antibiotics.

New study in @natmicrobiol.nature.com uncovers this hidden mechanism of drug resistance: buff.ly/s3YIwyK

@andresfloto.bsky.social @vpd-hlri.bsky.social @unibas.ch

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3 months ago
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Metabolic control of porin permeability influences antibiotic resistance in Escherichia coli - Nature Microbiology The permeability of bacterial porins is dynamically regulated by periplasmic proton and potassium concentrations, altering antibiotic resistance.

#NewResearch

The permeability of bacterial porins is dynamically regulated by periplasmic proton and potassium concentrations, altering antibiotic resistance.

#MicroSky #AMR 🦠 @andresfloto.bsky.social

www.nature.com/articles/s41...

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4 months ago
Image of VPD-HLRI building and text reads: Research Associate x2 (Fixed Term), Explore opportunities at Medicine at Cambridge.

Also includes logo of the University of Cambridge Department of Medicine.

We're seeking 2️⃣ research associates to join Professor
@andresfloto.bsky.social's lab @vpd-hlri.bsky.social. You'll be part of a multidisciplinary team exploring antibiotic uptake, efflux & metabolism across multiple bacterial pathogens.

Apply before 27 October: buff.ly/SqfTX3A

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5 months ago

Thank you. Could I have the sarcasm mug please? VPD Heart and Lung Researxh Institute, Papworth Road. cambridge Biomedical Research Centre Cambridge UK CB2 0BB

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7 months ago
Transverse section images of cultures from reporter line stained with Haematoxylin and Eosin.

Read our #DMMEditorsChoice highlight on the Research Article by Laetitia Pinte, @martavilagonz.bsky.social, @jamesnathanlab.bsky.social, @andresfloto.bsky.social, @pcicuta.bsky.social, @vallierlab.bsky.social and colleagues.

doi.org/10.1242/dmm....

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7 months ago
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A contextualised protein language model reveals the functional syntax of bacterial evolution Bacteria have evolved a vast diversity of functions and behaviours which are currently incompletely understood and poorly predicted from DNA sequence alone. To understand the syntax of bacterial evolu...

New pre-print up introducing our bacterial protein language model Bacformer, creating a unified representation of entire bacterial genomes led by @macwiatrak.bsky.social www.biorxiv.org/content/10.1...

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7 months ago

Check out Maciek's tweetorial for Bacformer with links to code, tutorials and blog post:
bsky.app/profile/macw...

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7 months ago
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💥 Excited to introduce Bacformer 🦠 - the first foundation model for bacterial genomics. Bacformer represents genomes as sequences of ordered proteins, learning the “grammar” of how genes are arranged, interact and evolve.

Preprint 📝: biorxiv.org/content/10.1...

🧵 1/n

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8 months ago
Photo of training in the Philippines and text reads: Cambridge-led project secures £1.2m from UKRI to pioneer same-day AMR diagnosis for leprosy in Southeast Asia

Also includes logo of Department of Medicine, University of Cambridge

New project led by Professor @andresfloto.bsky.social‬ and Dr Sundeep Chaitanya Vedithi at @cam.ac.uk‬ has received £1.2m funding from @ukri.org‬ to develop point-of-care DNA sequencing for rapid detection of #AMR in leprosy across the Philippines.

Read more: buff.ly/9UYWUBR

@vpd-hlri.bsky.social‬

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9 months ago
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Postdoctoral Research Associate (Fixed Term) - Job Opportunities - University of Cambridge Postdoctoral Research Associate (Fixed Term) in the Department of Medicine at the University of Cambridge.

One week left to join @andresfloto.bsky.social‬ 's team as a Postdoctoral Research Associate to develop new antibiotics against mycobacteria using permeability-enabled fragment-based #DrugDiscovery.

This 2-year fixed-term position is based in @cambridgebrc.bsky.social‬

🧬Apply by 12 June:

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11 months ago
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PhD Studentship - University of Cambridge PhD Studentship - Understanding chemical permeability and metabolism in gram-negative organisms in the Department of Medicine at the University of Cambridge.

📢 Few days left to apply for our PhD studentship at @vpd-hlri.bsky.social 📢

Our 3-year programme supervised by @andresfloto.bsky.social explores chemical permeability and metabolism using #ML #GenAI to guide antibiotic drug discovery.

Apply by 15 April➡️ buff.ly/9oCo4ZJ

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11 months ago
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Opinion: AI can transform health and medicine AI has the potential to transform health and medicine. It won't be straightforward, but if we get it right, the benefits could be enormous. Andres Floto, Mihaela van der Schaar and Eoin McKinney expla...

Hear more from our Professor Eoin McKinney, @andresfloto.bsky.social & Mihaela van der Schaar on how we're unleashing the full potential of AI in health and medicine, and how Cambridge Centre for AI in Medicine puts us in the perfect position to be leaders in the field⬇️

cam.ac.uk/opinion-ai-a...

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11 months ago
PhD Studentship - Understanding chemical permeability and metabolism in gram-negative organisms - Job Opportunities - University of Cambridge PhD Studentship - Understanding chemical permeability and metabolism in gram-negative organisms in the Department of Medicine at the University of Cambridge.

Exciting PhD studentship opportunity in @andresfloto.bsky.social lab on understanding chemical permeability to advance antibiotic drug discovery www.jobs.cam.ac.uk/job/50800/. Combines experimental approaches with in silico screening and generative AI.

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1 year ago
Evo is a genomic foundation model that enables prediction and generation tasks from the molecular to genome scale. Using an architecture based on advances in deep signal processing, Evo is trained on 7 billion parameters with a context length of 131 kilobases at single-nucleotide resolution. Evo captures two fundamental aspects of biology—the multimodality of the central dogma and the multiscale nature of evolution.

#ICYMI: In a Science study, researchers present “Evo”—a #MachineLearning model capable of decoding and designing DNA, RNA, and protein sequences, from molecular to genome scale, with unparalleled accuracy.

Learn more: scim.ag/41bmK6u

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