Enabling Discovery Through Genomics (EDGE)
The new Enabling Discovery through GEnomics (EDGE) Program page is posted. Please contact us at BIOEDGE@nsf.gov if you have questions. www.nsf.gov/funding/oppo...
08.12.2025 21:00 β π 80 π 53 π¬ 1 π 2
Ten years ago I had sent off my applications for faculty positions and found out that I was getting an interview with Chapel Hill Biostatistics.
08.12.2025 21:58 β π 21 π 0 π¬ 0 π 0
Let us know, e.g. @stemang.bsky.social or I if you have any ideas for something to post re: use cases for tidyomics to share or to develop.
08.12.2025 17:29 β π 1 π 0 π¬ 0 π 0
tidyomics project π R-bloggers!
www.r-bloggers.com/2025/10/the-...
Thanks to @stemang.bsky.social, Maria Doyle @bioconductor.bsky.social, @jhsanchez.bsky.social, Mengyuan Shen, Jonathan Carroll and others in tidyomics for testing and getting this up and running
08.12.2025 17:28 β π 17 π 4 π¬ 1 π 0
Impressive!
04.12.2025 12:12 β π 0 π 0 π¬ 0 π 0
YouTube video by 3Blue1Brown
Terence Tao on the cosmic distance ladder
www.youtube.com/watch?v=YdOX...
03.12.2025 15:36 β π 1 π 0 π¬ 1 π 0
en.wikipedia.org/wiki/Hertzsp...
03.12.2025 00:57 β π 0 π 0 π¬ 0 π 0
"HertzsprungβRussell diagram. A plot of luminosity (absolute magnitude) against the colour of the stars ranging from the high-temperature blue-white stars on the left side of the diagram to the low temperature red stars on the right side."
Is this the coolest scatterplot?
03.12.2025 00:57 β π 35 π 0 π¬ 2 π 0
As promised, a longer thread on what I consider to be some of the most interesting and important contributions of this paper (1/10)
01.12.2025 21:20 β π 13 π 7 π¬ 1 π 2
STATGEN 2026: Conference on Statistics in Genomics and Genetics
STATGEN 2026: Conference on Statistics in Genomics and Genetics, May 18-20, 2026. ASA Section on Statistics in Genomics and Genetics.
Consider submitting an abstract for an invited talk or poster at STATGEN 2026 by December 15th!
Amazing keynote speakers and statistical leaders in #genetics and #genomics! π
Hope to see you there! statgen26.emory.edu
π§ͺ 𧬠π₯οΈ π§ #statssky #imaging #SingleCell #spatial #omics #DigitalPathology
01.12.2025 18:25 β π 10 π 7 π¬ 0 π 0
A nice paper on distilling AI-based splicing models into much simpler additive models:
"[...] the distilled models achieve this without modeling RNA structure or feature interactions, indicating that [AI]-based splicing models recognize exons primarily through simple additive sequence features."
02.12.2025 00:53 β π 4 π 1 π¬ 1 π 0
https://ds.dfci.harvard.edu/postdocs/
π’ We are taking applications for our Postdoctoral Fellows Program at Harvard/DFCI!
πΉJoin a research group in our department
πΉCo-mentoring opportunities with 2+ faculty
πΉCollaborate with investigators beyond our department
πΉSalary starts at $75K
Apply here: t.co/B7SLZzQFKu
01.12.2025 18:59 β π 8 π 17 π¬ 0 π 0
Intro to Bedder β The Quinlan Lab
We are thrilled to announce the first official release (v0.1.8) of #π―π²π±π±π²πΏ, the successor to one of our flagship tool, #π―π²π±ππΌπΌπΉπ! Based on ideas we conceived of long ago (!), this was achieved thanks to the dedication of Brent Pedersen.
1/n
02.12.2025 02:28 β π 281 π 139 π¬ 5 π 10
β° Only a few hours left to register!
Donβt miss todayβs Bioconductor Seminar Series session:
βDeep-learning-based Gene Perturbation Effect Prediction Does Not Yet Outperform Simple Linear Baselines.β
ποΈ December 2, 2025
π 9PM CET / 3PM EST / 12PM PST
π Register here: dfci.zoom.us/webinar/regi...
02.12.2025 07:00 β π 5 π 1 π¬ 0 π 1
EIPOD-LinC Fellowship Programme β Postdoctoral Programme
Join EMBL's Interdisciplinary Postdoc Programme!
3 years funding, self-designed interdisciplinary project co-led between EMBL PI and PI in one of EMBL's actual, prospect or associate member states.
In particular: AI&Theory, use mathem. models, physics principles and AI
www.embl.org/about/info/p...
01.12.2025 11:00 β π 20 π 21 π¬ 2 π 0
Validate User
Excited to share that our article on accurate sample deconvolution of pooled snRNA-seq data using sex-dependent gene expression patterns is live on NAR Genomics and Bioinformatics! π
Check it out here: doi.org/10.1093/narg...
#NARGenomicsandBioinformatics #snRNAseq #Genomics #Bioinformatics
26.11.2025 17:44 β π 13 π 7 π¬ 1 π 2
Figure 1. Proteome compleasm scores for predicted transcripts by annotation method for vertebrates. The score is calculated as 1 β (number missing BUSCOs/total number of BUSCOs searched).
Joint distributions of number of predicted CDSs (normalized by number of NCBI predictions) over median predicted CDS length (nor- malized by median NCBI CDS length) for the reference species for each taxonomic group we examined, as well as M. musculus. Dotted lines indi- cate equivalence to NCBI annotation, such that methods that are closest to the intersection of those lines best approximate CDS length and number of NCBI annotations. A βPβ indicates that the method only makes protein- coding predictions.
Building better genome annotations across the tree of life
genome.cshlp.org/content/35/5...
TOGA, BRAKER3, and the RNA-seq assembler StringTie are top performers when benchmarking 12 different methods for 21 different species spanning vertebrates, plants, and insects.
30.11.2025 23:17 β π 5 π 1 π¬ 0 π 1
PanSN-spec: Pangenome Sequence Naming
github.com/pangenome/Pa...
30.11.2025 23:24 β π 3 π 1 π¬ 0 π 0
SuSiE 2.0: improved methods and implementations for genetic fine-mapping and phenotype prediction https://www.biorxiv.org/content/10.1101/2025.11.25.690514v1
28.11.2025 10:46 β π 19 π 8 π¬ 0 π 0
Portrait photo Katy BΓΆrner
π£ Listen to the BIH Lecture " Multiscale Human Reference Atlas - An Ontological Bridge Between Anatomy and Disease" by Stiftung CharitΓ© visiting fellow Prof. Dr. @katyborner.bsky.social.
π
December 5, 2025, 12:00 - 1:00 pm, online via Zoom
β‘οΈ tinyurl.com/4p9cjhph
Foto Β© Andreas Bueckle
28.11.2025 09:22 β π 3 π 1 π¬ 0 π 0
I am very excited to share this book! It has been so much to collaborate on the project. We hope you find it useful!
21.11.2025 22:11 β π 22 π 7 π¬ 0 π 0
We are excited to share our online book and preprint on βOrchestrating Spatial Transcriptomics Analysis with Bioconductorβ!
22.11.2025 12:38 β π 18 π 12 π¬ 1 π 0
Many people hours, calls and messages later: OSTA is now βin (pre)printβ, though the real thing lives at bioconductor.org/books/OSTA.
Check it out, get in touch. We welcome any feedback, suggestions, wishes (& contributions).
Itβs been a joy working with you @estellayixingdong.bsky.social!
21.11.2025 17:31 β π 39 π 24 π¬ 1 π 4
Representing EuroBioC2026 at the @abacbs.bsky.social Conference this week.
The next European @bioconductor.bsky.social Conference will be in Turku, Finland!
#ABACBS2025
#EuroBioC2026
25.11.2025 22:33 β π 15 π 8 π¬ 0 π 0
The European Southern Observatory designs, builds & operates world-class observatories on the ground for the benefit of society. More info on eso.org
Postdoc at Copenhagen University | foundation models for genomics | mtDNA heteroplasmy | ageing & psychiatric diseases | https://biobuild.github.io/
thinking about infectious diseases, information, and behavior
Postdoc UMD College Park
https://mjharris95.github.io/
https://linktr.ee/john_dickerson
Researcher in statistics and machine learning for genomics
https://laurent-jacob.github.io/
Professor of Computational and Molecular Biophysics at Cambridge University. We work on multiscale modeling of chromatin and biomolecular condensates. From Mexico City π²π½. Mum of two (She/Her)
Post-doc at UIUC studying stomatal patterning. Botanist by training with interests broadly in evo-devo, mechanistic modeling, and genetics, particularly in relation to grasses and cereals. Opinions my own.
NIH-F32 Postdoctoral Fellow @ChoryLab @DukeCAGT
Chromatin, SynBio, Automation
PhD @UCSF | #FirstGen | Nice to meet you friendβοΈπ²π
Robotics and Reinforcement Learning tinkerer.
brandonrohrer.com
Wrangler of algorithms for Confluence @ Atlassian.
Eater of bread. Sipper of whisky.
Reports to a Shih Tzu.
Automated discovery of AI x Bio preprint papers.
CNRS researcher in bioinformatics
Lille, France (Bonsai team).
I develop efficient computational methods to analyze massive sequencing data, creating scalable tools for genomics, transcriptomics, and metagenomics.
https://malfoy.github.io/
Evolutionary biologist, computational biologist, statistician. I like to develop mathematical models of evolutionary process and see how they fit to data. I also like cities where building apartments is legal.
AAAS Science & Technology Policy Fellow,
VA Office of Research & Development |
Prev: UAB, Case Western, Ohio State |
Science as a public service | Educator | Advocate | Musician | Proud Ohioan |
β + πΊ | Views my own
Neuroscientist | Postdoc in Martinowich lab at Lieber Institute for Brain Development | PhD with Day Lab at UAB
Art from the MoMA's Paintings and Sculpture collection.
The Museum of Modern Art (MoMA) is an art museum located in New York City. #artbots by @nuwaves-future.bsky.social
https://www.moma.org
How do cells form tissues? Our research program spans the scales from molecules to organisms. News from the Max Planck Institute of Molecular Cell Biology and Genetics (MPI-CBG) in Dresden, Germany. Impressum: https://www.mpi-cbg.de/impressum
Die 1386 gegrΓΌndete Ruperto Carola ist eine der forschungsstΓ€rksten in Europa.
Postdoctoral neuroscientist at JHU working at the intersection of neural circuits, bioinformatics, and psychiatric disorders.
https://mictott.github.io
Changing the lives of people with schizophrenia and related mental illnesses. Learn more about our research at www.libd.org.
