Joe Hanly's Avatar

Joe Hanly

@hanliconius.bsky.social

interested in evolution, development and butterflies. Smithsonian Postdoc fellow. #albinism. He/him πŸ³οΈβ€πŸŒˆ

1,215 Followers  |  575 Following  |  205 Posts  |  Joined: 26.09.2023  |  2.0624

Latest posts by hanliconius.bsky.social on Bluesky

Preview
Wound-induced eyespots on butterfly wings at the intersection of immune response and pigmentation development - BMC Biology Background Butterfly eyespots are striking examples of evolutionary novelty arising through the repurposing of ancestral genetic pathways, including pathways involved in wound healing. Given the activ...

A personal favorite, long time in the making. Adelina and David (@dduneau.bsky.social) were instrumental in getting this done.

doi.org/10.1186/s129...

29.10.2025 13:58 β€” πŸ‘ 10    πŸ” 9    πŸ’¬ 0    πŸ“Œ 0

"one dissection"

29.10.2025 18:47 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

An extension of this is what to expect when we look beyond major effect / Mendellian variation to quantitative traits. I always 'worry' that the fraction of variation we've identified so far is not that representative of all variation that exists. Maybe its all observer bias all the way down!

29.10.2025 15:14 β€” πŸ‘ 4    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Explaining academic job searches to my brother and he says β€œso basically, you’re through to Judges’ Houses” - and like, yeah, no notes.

28.10.2025 21:07 β€” πŸ‘ 4    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Ichetucknee Springs State Park, a short drive from Gainesville, FL

Ichetucknee Springs State Park, a short drive from Gainesville, FL

The Hopkins Lab (hopkins-lab.com) at the University of Florida is looking to recruit a postdoc to work on the genetics of organ function and evolution across Drosophila and beyond. Please visit tinyurl.com/vcsjpmzz or email me for more info. And please RT or send to anyone who might be interested!

15.10.2025 20:42 β€” πŸ‘ 34    πŸ” 40    πŸ’¬ 3    πŸ“Œ 1
Cr. to Shen Tian

Cr. to Shen Tian

My main PhD work @monteirolab.bsky.social is now in @natecoevo.nature.com! We found a Hox gene promoter that helps butterfliesπŸ¦‹adjust their wing eyespots in response to seasonal temperaturesπŸƒπŸ‚, shedding light on the evolutionary origin of phenotypic plasticity. 1/9 www.nature.com/articles/s41...

24.10.2025 10:14 β€” πŸ‘ 61    πŸ” 25    πŸ’¬ 2    πŸ“Œ 3

More reasons that Co. Biologists are my unproblematic fave

20.10.2025 20:27 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

While helping out on a cool genomics project recently, I came to realise I’d been taught a pretty big inaccuracy about the events that occur at fertilization. I suspect that almost everyone reading this has the same misapprehension, so let’s do some learning together: 1/

30.05.2025 18:51 β€” πŸ‘ 98    πŸ” 40    πŸ’¬ 2    πŸ“Œ 5

I've just seen, for the first time, a paper with author names both in latin characters and the language-of-origin characters. Apparently it's been Cell Press policy since 2021? I think this is great! I wonder if other journals have policies on this?

20.10.2025 19:57 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Screenshot of a Wikipedia article History article with the following text: The protein was discovered in 1996 by Italian scientists Silvia Bione et al., after long and intensive work.[15] Owing to the complex procedure required for the identification of tafazzin, the protein was named after Tafazzi, an Italian comedy character played by Giacomo Poretti who enthusiastically beats his groin with a plastic bottle, this as a symbol of masochism for the strenuous will to find it by the group of researchers.[77]

Screenshot of a Wikipedia article History article with the following text: The protein was discovered in 1996 by Italian scientists Silvia Bione et al., after long and intensive work.[15] Owing to the complex procedure required for the identification of tafazzin, the protein was named after Tafazzi, an Italian comedy character played by Giacomo Poretti who enthusiastically beats his groin with a plastic bottle, this as a symbol of masochism for the strenuous will to find it by the group of researchers.[77]

More journeys through fly gene etymologies.

20.10.2025 19:49 β€” πŸ‘ 3    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
Wood tiger moth on leaf. Photo: Juhani Maamela.

Wood tiger moth on leaf. Photo: Juhani Maamela.

Funded PhD position available πŸŽ‰ Come and work with me in Helsinki to uncover the pathways producing colourful tiger moth wings. Lots of options for genomics, CRISPR, fieldwork, behaviour experiments… Email with questions! jobs.helsinki.fi/job/Helsinki...

24.09.2025 08:53 β€” πŸ‘ 67    πŸ” 50    πŸ’¬ 3    πŸ“Œ 4

We're excited to be recruiting an NIH funded postdoc to work in the Coop lab at UC Davis. We're specifically interested in candidates who are want to work at the intersection of human genetics, GWAS, and population genetics modeling. Please RT

15.10.2025 15:53 β€” πŸ‘ 141    πŸ” 171    πŸ’¬ 1    πŸ“Œ 4

Maybe that’s just a drop in the ocean of her wealth….. but anyway. Maybe pirating can be an act of resistance ;)

13.10.2025 23:51 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

I am usually inclined to separating an artist from their art, but when we consume content that gives more money to this particular author, she has a history of using that money to fund court cases that have challenged LGBT rights in the U.K.

13.10.2025 23:49 β€” πŸ‘ 5    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Fair enough. Next up - what is a gene.

02.09.2025 00:13 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Surely that answers your question! A definition of a locus that doesn’t consider linkage might not be that meaningful!

02.09.2025 00:02 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Two pictures of the 70s Swedish Pop group ABBA. They are in two different arrangements in the left picture vs the right picture, leading to a visual pun about the population genetics measure called β€œABBA BABA”.

Two pictures of the 70s Swedish Pop group ABBA. They are in two different arrangements in the left picture vs the right picture, leading to a visual pun about the population genetics measure called β€œABBA BABA”.

ABBA / BABA

14.11.2024 21:01 β€” πŸ‘ 13    πŸ” 4    πŸ’¬ 1    πŸ“Œ 0

Great news, congratulations!

20.08.2025 12:46 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Excited to soon start my new role as Academy of Finland Research Fellow πŸ¦‹πŸ›I’ll later be advertising a PhD position on tiger moth colour and genomics, and will be speaking at #ESEB2025 this week if you want an idea of what’s going on!

18.08.2025 12:53 β€” πŸ‘ 55    πŸ” 18    πŸ’¬ 5    πŸ“Œ 1

This figure is an absolute beauty, wow! Congrats on a great paper.

01.08.2025 16:58 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

I was also under this misconception πŸ™‹β€β™‚οΈ thanks for sharing this mini review!

30.07.2025 06:04 β€” πŸ‘ 2    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

This seems to be exactly the case right up until you need to grow them to feed to caterpillars. Then they seem to change their tune.

30.07.2025 18:57 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

πŸ‘€πŸ‘€

28.07.2025 21:53 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Having some EvoDevoPanAm fomo today - I really need to make it down next time!

23.07.2025 18:28 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Video thumbnail

Preprint alert from the lab
@jasminealqassar.bsky.social led this elegant study of gene expression in the silk glands of our favorite alternative "silk worm", the pantry moth.

Mega-polyploid cells with thousands of genome copies just to express a handful of proteins

doi.org/10.1101/2025...

17.07.2025 11:09 β€” πŸ‘ 14    πŸ” 8    πŸ’¬ 0    πŸ“Œ 1
Preview
Franklin Stahl, biologist who helped reveal how DNA replicates, dies at 95 β€” The Washington Post An early experiment, with colleague Matthew Meselson, helped set the stage for a revolution in genetics.

apple.news/A6s0jhagcSLy...

08.07.2025 01:38 β€” πŸ‘ 77    πŸ” 25    πŸ’¬ 0    πŸ“Œ 6

Some hot-off-the-press #evodevo from Martik, with new insights on the macro-evolution of insect wing morphology!!

07.07.2025 16:24 β€” πŸ‘ 6    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Video thumbnail

Excited to advertise a shared PhD position at KU Leuven (Belgium) and Mondsee (Austria) with @markusmoest.bsky.social on the genetic basis, plasticity and evolution of melanization in Daphnia from alpine lakes. Apply here: www.kuleuven.be/personeel/jo...

07.07.2025 15:30 β€” πŸ‘ 48    πŸ” 23    πŸ’¬ 1    πŸ“Œ 1
The aim of this proposal is to place population genomic insights into a comparative framework to gain fundamental insights into the determinants of evolutionary outcomes. The project will work within LepEU, the European Lepidopteran Population Genomics Consortium (https://lepeu.github.io/). LepEU provides access to field samples from European populations of diverse species. Chromosome-scale reference genomes are provided by Project Psyche (https://www.projectpsyche.org/). Networking during the postdoc will be facilitated by participation in the 10kLepGenomes COST Action (https://10klepgenomes.eu/). Existing datasets await analysis, while additional samples need DNA extraction and submission for sequencing. Functional validation capability (CRISPR/Cas9 gene manipulations) is also available to test emergent hypotheses of allele-to-phenotype impacts. Personal research interests of the postdoc will be important to determine the exact project, as the project has a generous sequencing budget.

The aim of this proposal is to place population genomic insights into a comparative framework to gain fundamental insights into the determinants of evolutionary outcomes. The project will work within LepEU, the European Lepidopteran Population Genomics Consortium (https://lepeu.github.io/). LepEU provides access to field samples from European populations of diverse species. Chromosome-scale reference genomes are provided by Project Psyche (https://www.projectpsyche.org/). Networking during the postdoc will be facilitated by participation in the 10kLepGenomes COST Action (https://10klepgenomes.eu/). Existing datasets await analysis, while additional samples need DNA extraction and submission for sequencing. Functional validation capability (CRISPR/Cas9 gene manipulations) is also available to test emergent hypotheses of allele-to-phenotype impacts. Personal research interests of the postdoc will be important to determine the exact project, as the project has a generous sequencing budget.

The successful applicant should have a PhD (obtained within 6 years of the application deadline) in a suitable subject area, such as evolutionary biology or population genomics. A strong interest in population genomics, local adaptation, comparative analyses, and experience working with genomic-scale data is essential. The candidate must have a documented publication record demonstrating relevant skills. Experience working with bioinformatic pipelines (e.g., Snakemake), or working with butterflies is welcome but not essential. The net salary is 28,000 SEK/month (~2,430 Euro, not subject to Swedish income tax) and comes directly from the Carl-Trygger Foundation stipend, which is paid out directly to the postdoc. Only PhD candidates acquired outside of the host department can apply. Currently, the lab of Prof. Wheat consists of 3 postdoctoral researchers, while the Dept. of Zoology provides a vibrant and excellent research environment of active, dynamic researchers. 

Applications should include: i) a succinct description of research interests and experience, detailing your contribution to any relevant publications (max 1 page), ii) why you are the ideal candidate for this position in the lab (max 1 page); iii) a CV including a list of publications, and iv) the name and contact information of two personal references. 

Applications will be reviewed on a rolling basis with a deadline of 23 August 2025. The project is planned to start on 1 October, but flexibility in the starting date can be provided for a suitable candidate. Please contact Prof. Wheat for additional information.

The successful applicant should have a PhD (obtained within 6 years of the application deadline) in a suitable subject area, such as evolutionary biology or population genomics. A strong interest in population genomics, local adaptation, comparative analyses, and experience working with genomic-scale data is essential. The candidate must have a documented publication record demonstrating relevant skills. Experience working with bioinformatic pipelines (e.g., Snakemake), or working with butterflies is welcome but not essential. The net salary is 28,000 SEK/month (~2,430 Euro, not subject to Swedish income tax) and comes directly from the Carl-Trygger Foundation stipend, which is paid out directly to the postdoc. Only PhD candidates acquired outside of the host department can apply. Currently, the lab of Prof. Wheat consists of 3 postdoctoral researchers, while the Dept. of Zoology provides a vibrant and excellent research environment of active, dynamic researchers. Applications should include: i) a succinct description of research interests and experience, detailing your contribution to any relevant publications (max 1 page), ii) why you are the ideal candidate for this position in the lab (max 1 page); iii) a CV including a list of publications, and iv) the name and contact information of two personal references. Applications will be reviewed on a rolling basis with a deadline of 23 August 2025. The project is planned to start on 1 October, but flexibility in the starting date can be provided for a suitable candidate. Please contact Prof. Wheat for additional information.

🚨Postdoc opportunity🚨: LepEU postdoc: comparative population genomics of European scale adaptation in butterflies

2 year, full-time PD in my group, Stockholm Univ.

Applications assed on rolling basis, deadline: 23 August 2025. Planned start 1 Oct.

Details:
christopherwheatlab.wordpress.com

22.06.2025 18:20 β€” πŸ‘ 64    πŸ” 71    πŸ’¬ 0    πŸ“Œ 0
Preview
Whole-genome ancestry of an Old Kingdom Egyptian - Nature Whole-genome sequencing of an ancient male Egyptian revealed a mixture of North African Neolithic and eastern Fertile Crescent ancestry, suggesting human migration between Egypt and Mesopotamia by the...

Forty years after Svante PÀÀbo kicked off this extraordinary field of science, today sees report of the first whole-genome sequence of an ancient Egyptian (from 2855–2570BCE). Exciting work from @pontus-skoglund.bsky.social, @flinklinus.bsky.social, & co at @ljmuofficial.bsky.social, @crick.ac.uk.🧬πŸ§ͺ

02.07.2025 16:09 β€” πŸ‘ 86    πŸ” 26    πŸ’¬ 2    πŸ“Œ 3

@hanliconius is following 19 prominent accounts