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Stevie Ped

@smped.bsky.social

๐Ÿ‡ฆ๐Ÿ‡บ They/Them. Biological data nerd & Bioconductor contributor. Black Ochre Data Labs. Intermittent musician. Interested in Bioinformatics, Aboriginal Health, Covid Research, Transgender Rights & Politics. You'll get all of those from me at random

1,552 Followers  |  1,703 Following  |  520 Posts  |  Joined: 21.11.2023  |  2.0314

Latest posts by smped.bsky.social on Bluesky

also see: Sam Altman

09.12.2025 13:46 โ€” ๐Ÿ‘ 36    ๐Ÿ” 4    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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On a per-capita basis, Active Aged Care Staff Cases in South Australia have been higher than in other states, for a few weeks now.
๐Ÿงต

09.12.2025 10:05 โ€” ๐Ÿ‘ 13    ๐Ÿ” 3    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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The Tidyomics Ecosystem โ€“ tidyomicsBlog An introduction to the tidyomics ecosystem, including principles, core packages, publications, and community resources for tidy omic analysis.

It's official! The #tidyomics blog is up! ๐Ÿš€

Here, the introductory post
tidyomics.github.io/tidyomicsBlo...

This blog aims to publish not only news about our community but also anything related to tidy interfaces, opinions, events, and more.

Plz share! ๐Ÿ™
@bioconductor.bsky.social #rstats

07.12.2025 23:07 โ€” ๐Ÿ‘ 22    ๐Ÿ” 12    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

in short, this is such incompetent & unclear comms that it could be interpreted as a political endorsement from Bluesky PBLLC in favor of ICEโ€™s unconstitutional racist raids against Americans.

when youโ€™re the bouncer at a dive bar, you need to clearly delineate when youโ€™re on or off the clock.

08.12.2025 06:29 โ€” ๐Ÿ‘ 497    ๐Ÿ” 62    ๐Ÿ’ฌ 4    ๐Ÿ“Œ 1

Brief reminder about the banality & predictability of politics

08.12.2025 10:28 โ€” ๐Ÿ‘ 1    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Evoking Indigenous Health Sovereignty: what regulators must learn

Evoking Indigenous Health Sovereignty: what regulators must learn www.croakey.org/evoking-indi...

08.12.2025 07:02 โ€” ๐Ÿ‘ 1    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Our DNA, Our Sovereignty: Reclaiming Genetic Data in Indian Country Native genetic data has been taken, studied, and stored often without tribal consent. TCUs can lead the effort to change the paradigm.

1/2 This has been an issue since at least 1996 (long before if you include birth control, radiation, syphilis and tuberculosis research). In a way itโ€™s bad we are still talking about this with universities and federal funders), tribalcollegejournal.org/our-dna-our-...

07.12.2025 20:29 โ€” ๐Ÿ‘ 13    ๐Ÿ” 4    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Great #rstats package for visualising uncertainty #dataviz

07.12.2025 11:03 โ€” ๐Ÿ‘ 14    ๐Ÿ” 4    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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The latest Australian Respiratory Surveillance Report confirms my earlier speculation that the new "clade K" (H3N2 clade 2a.3a.1, subclade K) is driving the "unusual" second wave of influenza in Australia.
www.health.gov.au/resources/pu...
๐Ÿงต

07.12.2025 07:39 โ€” ๐Ÿ‘ 17    ๐Ÿ” 4    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Morning. โ˜•๏ธ

06.12.2025 18:26 โ€” ๐Ÿ‘ 81    ๐Ÿ” 12    ๐Ÿ’ฌ 10    ๐Ÿ“Œ 1

So will these organisations now take any money, as will inevitably offered by wealthy & powerful people, to defend themselves against the Good Law Project?

06.12.2025 10:01 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

What kind of sick fuck could be opposed to eliminating prison rape?

05.12.2025 04:19 โ€” ๐Ÿ‘ 573    ๐Ÿ” 119    ๐Ÿ’ฌ 35    ๐Ÿ“Œ 7
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Haskell IS a Great Language for Data Science Iโ€™ve been learning Haskell for a few years now and I am really liking a lot of the features, not least the strong typing and functional approach. I thought it was lacking some of the things I missed from R until I found the dataHaskell project. In this post Iโ€™ll demonstrate some of the features and explain why I think it makes for a good (great?) data science language.

Perhaps you saw the post series "Python is not a great language for data science"... well, here's

Haskell IS a Great Language for Data Science

https://jcarroll.com.au/2025/12/05/haskell-is-a-great-language-for-data-science/

#haskell :haskell:
#rstats :rstats:

05.12.2025 06:07 โ€” ๐Ÿ‘ 31    ๐Ÿ” 11    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 2
PRESS RELEASE
Groundbreaking myalgic encephalomyelitis study identifies over 250 core genes, shared biology with long COVID, and dozens of drug repurposing opportunities
The study reinforces that ME is a complex multisystemic condition with a clear genetic basis and lays the foundation for future clinical trials that could be faster to recruit and more likely to succeed
Read our FAQs

OXFORD, UK โ€“ 4 December 2025 โ€“ PrecisionLife today announced new findings from the most detailed genetic analysis of myalgic encephalomyelitis (ME, also known as ME/CFS) ever conducted, revealing more than 250 core genes associated with the disease, including 76 genes linked with long COVID, and uncovering dozens of drug repurposing opportunities supported by genetic biomarker tests, offering potential for faster and lower-risk routes to developing targeted treatments.

The study, now available as a pre-print and submitted for peer review, applied PrecisionLife's AI-led combinatorial analytics platform to analyze genomic data from two DecodeME cohorts together with UK Biobank to confirm reproducibility of results across three independent datasets. The analysis identified 7,555 genetic variants (including the 8 identified by the recent DecodeME GWAS study ), that were consistently associated with increased disease risk in three different populations.

PRESS RELEASE Groundbreaking myalgic encephalomyelitis study identifies over 250 core genes, shared biology with long COVID, and dozens of drug repurposing opportunities The study reinforces that ME is a complex multisystemic condition with a clear genetic basis and lays the foundation for future clinical trials that could be faster to recruit and more likely to succeed Read our FAQs OXFORD, UK โ€“ 4 December 2025 โ€“ PrecisionLife today announced new findings from the most detailed genetic analysis of myalgic encephalomyelitis (ME, also known as ME/CFS) ever conducted, revealing more than 250 core genes associated with the disease, including 76 genes linked with long COVID, and uncovering dozens of drug repurposing opportunities supported by genetic biomarker tests, offering potential for faster and lower-risk routes to developing targeted treatments. The study, now available as a pre-print and submitted for peer review, applied PrecisionLife's AI-led combinatorial analytics platform to analyze genomic data from two DecodeME cohorts together with UK Biobank to confirm reproducibility of results across three independent datasets. The analysis identified 7,555 genetic variants (including the 8 identified by the recent DecodeME GWAS study ), that were consistently associated with increased disease risk in three different populations.

UK press release:

Groundbreaking myalgic encephalomyelitis study identifies over 250 core genes, shared biology with #longCOVID, and dozens of drug repurposing opportunities

precisionlife.com/news-and-eve...

Paper:
www.medrxiv.org/content/10.6...

#MEcfs #CFS #PwME @precisionlife.bsky.social

04.12.2025 13:27 โ€” ๐Ÿ‘ 33    ๐Ÿ” 18    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 3

Dammit. He write the goddamn textbook for a whole genre of guitar playing.

04.12.2025 04:04 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

This Pluribus ad on a fridge caused a schizophrenic woman named Carol to be hospitalized.

04.12.2025 03:08 โ€” ๐Ÿ‘ 6919    ๐Ÿ” 3040    ๐Ÿ’ฌ 154    ๐Ÿ“Œ 321

Stoked they hold millions in Aus govt contracts, good times

04.12.2025 03:34 โ€” ๐Ÿ‘ 53    ๐Ÿ” 19    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 0

When I was young,
I used to admire intelligent people;
As I grow older, I
admire kind people.
Abraham Heschel

03.12.2025 09:05 โ€” ๐Ÿ‘ 6    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

COVID myths, which include anti-vax nonsense promoted by the current FDA, have been the tip of the spear for fascist recruitment.

They offered far-right elements entry into circles they previously were unable to penetrate.

30.11.2025 08:10 โ€” ๐Ÿ‘ 159    ๐Ÿ” 30    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 0

Thanks Tommy for sharing our work. we recently updated some of our core packages in Python, especially Genomic Ranges that can perform some very fast interval operations, more here - bsky.app/profile/jkan...

26.11.2025 01:07 โ€” ๐Ÿ‘ 10    ๐Ÿ” 2    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

And let us never forget that the WHO recommended "rubbing your hands" if you couldn't wash them to try reduce the spread of Covid.

And no-one was fired for it.

03.12.2025 02:59 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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If you ever wondered what GOP gerrymandering looks like in red states with blue cities, I present:

02.12.2025 20:49 โ€” ๐Ÿ‘ 5830    ๐Ÿ” 2194    ๐Ÿ’ฌ 86    ๐Ÿ“Œ 137

When writing this piece, I kept thinking back to this Instagram post I saw from a trans woman the other day. This is what I'm talking about. Watch this:

03.12.2025 00:35 โ€” ๐Ÿ‘ 2521    ๐Ÿ” 934    ๐Ÿ’ฌ 16    ๐Ÿ“Œ 46

In a world where sadly your dollar is an endorsement, i really will be side eyeing everyone who posts their Spotify wrapped this year. Your dollar is being used to pay for AI warfare actively killing people. Your dollar makes them feel comfortable with running ICE ads. Cancel that shit already.

02.12.2025 21:25 โ€” ๐Ÿ‘ 266    ๐Ÿ” 116    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 1
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230,000 Deaths and the โ€˜Calculated Silenceโ€™ of the Medical Establishment About the COVID Inquiry The Covid Inquiry Report is a devastating critique of the medical establishment which led the UK to the worst public health disaster in a century, argues Anthony Costello

Hard-hitting truth-telling from UCL Prof Anthony Costelloโ€ฆ.

โ€œThe Covid Public Inquiry is a devastating critique of medical advisers, civil servants and politicians who led the UK to the worst public health disaster in a century. More than 230,000 deaths.โ€

www.bylinesupplement.com/p/230000-dea...

29.11.2025 09:58 โ€” ๐Ÿ‘ 879    ๐Ÿ” 401    ๐Ÿ’ฌ 31    ๐Ÿ“Œ 20

I remember the time when everyone hated GMO, not because of what it is, but because of the business practices of the corporations pushing it, like Monsanto as an example.

AI is exactly the same, the problem is the ethics of the big companies, not the inherent technology.

02.12.2025 10:10 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Ever since we started making documents in Quarto and Typst, I've wanted to make EVERYTHING in Quarto and Typst. Curious to learn how make documents like these? Boy, do I have the blog post for you! #rstats

rfortherestofus.com/2025/11/quar...

01.12.2025 13:36 โ€” ๐Ÿ‘ 49    ๐Ÿ” 11    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
EIPOD-LinC Fellowship Programme โ€“ Postdoctoral Programme

Join EMBL's Interdisciplinary Postdoc Programme!
3 years funding, self-designed interdisciplinary project co-led between EMBL PI and PI in one of EMBL's actual, prospect or associate member states.

In particular: AI&Theory, use mathem. models, physics principles and AI

www.embl.org/about/info/p...

01.12.2025 11:00 โ€” ๐Ÿ‘ 20    ๐Ÿ” 21    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 0

6 years today the first COVID case was identified in a man in Wuhan marking the beginning of a global pandemic that changed the world. We are way less prepared today to face another pandemic than we were back then. This fact makes me sad.

30.11.2025 22:52 โ€” ๐Ÿ‘ 2709    ๐Ÿ” 743    ๐Ÿ’ฌ 43    ๐Ÿ“Œ 41
COVID can cause a long-lasting breakdown of immune homeostasis, where elevated IL-7 and IL-15 keep T cells activated for months after the acute infection.
In some people this dysregulated state becomes persistent - and may directly contribute to long COVID๐Ÿงต

COVID can cause a long-lasting breakdown of immune homeostasis, where elevated IL-7 and IL-15 keep T cells activated for months after the acute infection. In some people this dysregulated state becomes persistent - and may directly contribute to long COVID๐Ÿงต

๐Ÿšจ๐Ÿงต by Zdenek Vrozina on Covid's impact:

"COVID can cause a long-lasting breakdown of immune homeostasis, where elevated IL-7 and IL-15 keep T cells activated for months after the acute infection.
In some people this dysregulated state becomes..."

18-tweet ๐Ÿงต
threadreaderapp.com/thread/19947...

30.11.2025 02:51 โ€” ๐Ÿ‘ 31    ๐Ÿ” 15    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 1

@smped is following 20 prominent accounts