@barbarazpc.bsky.social
phd student @saezlab.bsky.social π» β¨ trying to reduce pain in this world by studying diseases + drugs π also super interested in figuring out how to prevent misinformation in society π
π₯ Check out our new preprint on OmniPath, the prior knowledge resource for #SystemsBiology, and its brand-new OmniPath Explorer web app! π₯³
π Preprint: www.biorxiv.org/content/10.1...
π Explorer: explore.omnipathdb.org
OmniPath integrates 160+ resources for multi-omics analysis & modeling.
π§Άβ¬οΈ
π we are involved in projects 1 & 6 on the list:
1οΈβ£ Multicellular molecular characterisation of inflammatory bowel disease
6οΈβ£ Designing Efficient Single-Cell Perturbation Experiments with Lab-in-the-Loop AI Agents
π
Application deadline is 30th September β
π The revised version of CORNETO, our unified Python framework for knowledge-driven network inference from omics data, is published in peer reviewed form
π Paper: www.nature.com/articles/s42...
π News & Views: www.nature.com/articles/s42...
π» Code: corneto.org
𧡠Thread π
π§ decoupler 2.0.6 is out thanks to @paubadiam.bsky.socialβ¬, now as a core @scverse.bsky.social package scverse.org
This release includes a streamlined API aligned with scverse standards, updated vignettes, and a new one on pseudotime enrichment analysis π
decoupler.readthedocs.io/en/latest/
In this Voices article, our @martingarridorc.bsky.social & @juliosaezrod.bsky.social discuss key strategies for building context-specific molecular networks: knowledge and data-driven methods, + future directions in the field bridging to structures and perturbations tinyurl.com/z8t6yych
30.05.2025 06:27 β π 3 π 4 π¬ 0 π 0
Ever wondered which method to use to infer kinase activities from phosphoproteomics data? π»πOur revised comprehensive evaluation of kinase activity inference tools, done in collaboration with the Zhang lab @bcmhouston.bsky.social, is now out @natcomms.nature.com π¬ tinyurl.com/4twuc6z4
23.05.2025 07:37 β π 47 π 20 π¬ 1 π 2
Here it is! Bonsai. Now there is really no more excuse for using t-SNE/UMAP. Bonsai not only makes cool pictures of your data. It actually rigorously preserves its structure. No tunable parameters. Incredible work by @dhdegroot.bsky.social.
I'm so excited about this!
www.biorxiv.org/content/10.1...
Move over mitochondria, a new organelle called the nitroplast is here.
In a Science study last year, researchers reported that a nitrogen-fixing organelle has been identified in a marine alga.
Learn more in this #SciencePerspective: scim.ag/49GjClc #ScienceMagArchives
MCML Blog: π¨ Hate speech spreads fast β and itβs not just about detecting hate or profiling its authors. Who reshares it?
Dominique Geissler, Abdurahman Maarouf & PI Stefan Feuerriegel analyzed the profiles of hate speech spreaders on social media. π
π Read more: mcml.ai/news/2025-04...
Members of saezlab enjoying the good weather in Ascona.
Wrapping up in beautiful Ascona βοΈ for the Modern Benchmark Conference sites.google.com/view/ascona2.... Great to see the community discussing a field thatβs essential yet often overlooked and challenging @smuellerdott.bsky.social @barbarazpc.bsky.social @ivanovaos.bsky.social @paubadiam.bsky.social
27.03.2025 09:11 β π 18 π 2 π¬ 0 π 1
πΊπ¦ππ¬π§ Standing with Ukraineβenhancing OSINT for a safer future!
Since day one, OSINT Industries has supported Ukrainian law enforcement with free access. Recently, EUAM Ukraine led a 4-day OSINT training at Π₯ΠΠ£ΠΠ‘ in Vinnytsia, equipping officers with advanced skills.
Proud to support this mission!
Vevo therapeutics released their 100M perturbed single cell atlas!
- git repo: github.com/ArcInstitute...
- press release: www.prnewswire.com/news-release...
