Edwin Hernández-Garzón

Next blog post!

I built another simple Marimo app to explore FPs spectra and other properties. It was a fun little trip, I hope you find it insightful.

Find it here:
marcodallavecchia.gitlab.io/web/blog/mar...

A flyer for the Bioimage Analysis Beginnings Bootcamp - blue and white with a picture of cells on the top. It says "Learn core bioimage analysis skills using open-source tools for light microscopy. Open to participants at all skill levels." It also says it will be held a the Broad Institute, 415 Main Street, Cambridge MA USA, on Monday to Friday January 12th-16, 2026, from 9-5pm. Registration is $750 academic, $1250 industry, and applications are open at broad.io/BAB3

Big news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2026 course!

Bioimage Analysis Specialist | King's College London

BioImage analysis friends - King's are recruiting for a full-time, permanent facility position! Come and work with fun microscopes and fun people (and me!) - please share! www.kcl.ac.uk/jobs/126345-...

Anyone interested in getting my job?

Do not hesitate to apply, it's a pretty good gig

La geometría oculta en el cerebro: así construimos mapas mentales para orientarnos en el mundo Las neuronas se encienden formando anillos tridimensionales para reconocer el espacio que nos rodea y relacionar la información con nuestros recuerdos y experiencias.

La geometría oculta en el 🧠 !! Mi último artículo de divulgación en @es.theconversation.com sobre nuestro trabajo con Julio Esparza sobre los mapas hipocampales 👉🏼
theconversation.com/la-geometria...

Proud to take on this challenge: building the new Centro de Neurociencias Cajal @institutocajal.bsky.social into a space where neuroscience crosses boundaries and transforms how we understand the 🧠!!

🚨 La neurocientífica 𝗟𝗶𝘀𝗲𝘁 𝗠𝗲𝗻é𝗻𝗱𝗲𝘇 𝗱𝗲 𝗹𝗮 𝗣𝗿𝗶𝗱𝗮 (@lmprida.bsky.social) es la nueva directora del 𝗖𝗲𝗻𝘁𝗿𝗼 𝗱𝗲 𝗡𝗲𝘂𝗿𝗼𝗰𝗶𝗲𝗻𝗰𝗶𝗮𝘀 𝗖𝗮𝗷𝗮𝗹 (𝗖𝗡𝗖) del @csic.es

👉 Su reto: situar a España en la vanguardia internacional con proyectos que transformen cómo entendemos el cerebro.

Más info: bit.ly/3I2QVFL

Crick BioImage Analysis Symposium 2025 Poster

The #CBIAS2025 abstract deadline is this Sunday, August 31st. Submit your #BioImageAnalysis work, whether it’s a new tool or a biological discovery. #EarlyCareerResearchers, this is for you! Short and flash talk slots are up for grabs.

www.crick.ac.uk/whats-on/cri...

Visual of segmented human induced pluripotent stem cells with the key workshop dates: Symposium on November 10-11, Hackathon on November 12-14th in Zurich Switzerland

We're happy to announce the 2025 International OME-NGFF workshop 🎉

📅 Dates:
- Symposium: Nov 10–11, 2025
- Hackathon: Nov 12–14, 2025

📍 Location: Zurich, Switzerland

Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up... 

#bioimaging #openscience #OMENGFF #OMEZarr

(1/x 🧵)

🔬 REMOA 2025 SCIENTIFIC IMAGE CONTEST

If you use optical microscopy in your research, share your most stunning images!

🧪 Open to all adults
📸 Original and digitally processed images (no AI-generated)
🎁 Prize: Free registration to #SPAOM2025 (Braga, Nov 5–7)
📍 Deadline: september 1st
More info 👇

Happy to be the next (and 1st female) @crg.eu director. The CRG always stood out to me, for its excellence in understanding life's principles, with implications for health and biodiversity, & its collaborative, open and innovative way of doing science. Thrilled to join its amazing community in 2026!

- A postdoc to work on cancer extravasation (4-year project).
- A postdoc help in completing Filopodia-related lab projects (2-year).
- Multiple Marie Curie postdoc positions that will open in the fall.
- We will open a 5-year position to cover my teaching (70% research and 30% teaching).

A checklist for designing and improving the visualization of scientific data Nature Cell Biology - Creating clear and engaging scientific figures is crucial to communicate complex data. In this Comment, I condense principles from design, visual perception and data...

I gave in! After students asking for it, I now made a simple figure design checklist.
To help all scientists w/o graphic skills create clear, accessible, and truthful charts!
-> Out in @nature Cell Biology: rdcu.be/erwl4

#DataVisualization #PhD #SciComm

Thx for review @bethcimini.bsky.social + 2

En busca de una cura para el alzhéimer en el ojo de un pollo Una idea de un investigador del CSIC se ha convertido en una terapia génica que se probará en humanos en 2026

@jmfrade.bsky.social is showing his lab work in the press. From the chicken retina to the regulation of the cell cycle. The history of a trip that looks for alternative approaches to treat neurodegeneration.

Are you looking for a postdoc?
I will be looking for 2-4 people after the summer to join the lab !!
Do not hesitate to reach out and disseminate !!

[PUBLI] μPIX: A new approach to sustainable and personalized microscopy

Engineers from @IBDMmarseille and LIS (FBI Marseille node) have developed this #deeplearning algorithm based on generative #AI to address challenges caused by aging microscopes

This solution is freely available on @gitlab.com

Sin noticias del Museo Cajal: un año después, el Gobierno sigue sin anunciar su ubicación y el plan está en punto muerto Malestar entre científicos y familiares del Nobel español, que piden al Gobierno que cumpla el compromiso y ejecute lo aprobado en el Real Decreto de junio de 2024 para ubicar su legado en un museo na...

‼️ Ya para socios. Sin noticias del Museo Cajal: un año después, el Gobierno sigue sin anunciar su ubicación y el plan está en punto muerto www.eldiario.es/1_bd191b?utm...

mScarlet3-H (aka mYongHong) is on the cover of Nature Methods! All plasmids are available for free from WeKwikGene wekwikgene.wllsb.edu.cn/publications...

OME logo in Red Green and Blue, followed by At sign and letters MBL

#microscopycommunity- do you use BioFormats, OMERO, OME-TIFF, OME-Zarr or are you interested in open source and microscopy? Then you should check out the recordings from OME2025!

buff.ly/fgUxoQf
@openmicroscopy.org
@gerbi-gmb.de‬.
@jacksonlab.bsky.social‬
@mblscience.bsky.social

Michele Bortolomeazzi, Christian Schmidt and Jan-Philipp Mallm at @nfdi4bioimage.bsky.social have developed a new OMERO-web plugin: OMERO-vitessce. It enables the visualization of datasets hosted in #OMERO with the #Vitessce multimodal data viewer.
Find the poster here:
👉 zenodo.org/records/1483...

#elmi2025 working toward joining forces of builders and creators to share *community tools* @eulimi.bsky.social @bioimagingna.bsky.social -> submit your tool (elmi.embl.org/tools/)

GloBIAS @globias.bsky.social presents itself (via the one and only @mycroscopy.bsky.social) at the @ai4life.bsky.social communityevent in Helsinki!
Join as a member and come to Japan this fall!!! 🎉

The culmination of years of hard work by Anna Maria Reuss & Co: aDISCO - a protocol for clearing & antibody-staining human formalin-fixed paraffin-embedded (FFPE) tissue! With lots of @mesospim.bsky.social #lightsheet #Microscopy @ptrrupprecht.bsky.social & many more!
www.biorxiv.org/content/10.1...

In the context of our @reviewcommons.org revision process, I'm happy to announce Microscopy Nodes v2.2.0!
This packs lots of new fun features, including new color management 🌈, clearer transparency handling 🫥, custom default settings 🔧 and more!
Preprint at doi.org/10.1101/2025...

#GloBIAS conference 2025 Kobe, Deadline extended to June 15th! This includes the training school, two hackathons, and taggathon registration, not only the symposium (... but sorry, the travel grant for the training school has closed)

Microscopy Training Grants Supporting microscopy training for early-career researchers in cell biology Apply for a grant of up to £1,000 Application dates: 6 June 2025 5 September 2025 7 November 2025

If you would like to attend a #microscopy or #bioimageanalysis training course in the next 6 months but don’t have funding, check out our Microscopy Training Grant from @jcellsci.bsky.social and @focalplane.bsky.social.

Next deadline: 6 June 2025

www.biologists.com/grants/jcs-f...

#Training

Photo of a teddy bear, child toy that is a bit worn out

Today I will be working on the import of glTF format to #bigdatabrowser. It is a common format to store 3D scenes and object (meshes), so it would be nice to have it. As a datasource, real life and 3D model, I will be using this guy. Let's see how far I can go (1/N)

🧵5 Top Free Alternatives to BioRender for Scientific Illustrations!

These five websites offer free scientific illustrations for biologists. Great for presentations, research papers and other research communication needs.

Save and share the post!

Bonsai: Tree representations for distortion-free visualization and exploratory analysis of single-cell omics data Single-cell omics methods promise to revolutionize our understanding of gene regulatory processes during cell differentiation, but analysis of such data continues to pose a major challenge. Apart from...

Here it is! Bonsai. Now there is really no more excuse for using t-SNE/UMAP. Bonsai not only makes cool pictures of your data. It actually rigorously preserves its structure. No tunable parameters. Incredible work by @dhdegroot.bsky.social.
I'm so excited about this!
www.biorxiv.org/content/10.1...