Nicolas Chiaruttini

Nicolas Chiaruttini

@nkiaru.bsky.social

Microscopist and Bio-Image Analyst for the BioImaging and Optics Platform https://biop.epfl.ch/ at EPFL https://nicolas.chiaruttini.org

1,010 Followers 947 Following 220 Posts Joined Apr 2024
1 day ago
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Claude Shared via Claude, an AI assistant from Anthropic

Ah, after 2 iterations it works nicely: claude.ai/share/779e01...

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1 day ago
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Surprisingly Opus is worse than Sonnet:

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1 day ago

I retried this given the claimed new capabilities of Claude for (interactive) sketches. Better, but we're not there yet (look at the v0 tangent:

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6 days ago

๐Ÿ‘ and so happy to see the task progress bar being used!

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1 week ago
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Appose processing hackathon with @jytinevez.bsky.social, @ctrue.bsky.social, @gaellel.bsky.social, @strigaud.bsky.social, Carlos and Thomas . Simple POC with Java calling python through Appose to flip blocks. Promising!

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2 weeks ago

I need this.

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3 weeks ago

YouTube's real genius: get companies to pay for ads so annoying that users end up paying Google directly to remove them. Brands fund their own irrelevance.

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3 weeks ago
ome-ngff-tools Document available viewers and other tools for the OME-NGFF image format

Very informative:

ome.github.io/ome-ngff-too...

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1 month ago

Nice! But why the black edges ?

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1 month ago

Nice! Sorry no time to look in detail, but how does mcp work with images ? Is there an included vision model that takes rgb screenshots, or is it just text based ?

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1 month ago

๐Ÿ˜‚

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1 month ago
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Unexpected artistic image.

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1 month ago
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Smashing console logs (which are not errors) -> very dumb bottleneck ๐Ÿ˜….

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1 month ago

And... Claude did it ๐Ÿ˜ฑ

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1 month ago

10 hours -> 10 seconds for initialisation. Looks promising.

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1 month ago

Claude code flexing:
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For your case with uniform TIFFs on network storage, lazy validation would transform a multi-hour init into seconds. The validation cost is amortized across actual reads.
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Let's see if that's true!

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1 month ago

Is there a way to sync claude code with git: if I switch branch or checkout an older commit then the discussions revert to their states at these previous points / branch ?

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1 month ago
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a woman says " would you like to join us " with her eyes closed ALT: a woman says " would you like to join us " with her eyes closed

๐Ÿ“ข Open faculty position โ€“ Origins of Life
We have an opening in our section at the University of Geneva! ๐Ÿงฌ๐Ÿš€

SPREAD THE WORD

Apply here: jobs.unige.ch/www/wd_porta...

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2 months ago
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"Resist the empire building" Too late! Here's the dependency graph of packages developed at the BIOP for ABBA (go.epfl.ch/abba) (except clij and labkit)

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2 months ago

A bit late to the party but ๐Ÿคฏ by Claude code.

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2 months ago

Are there any rankings of LLM capabilities by language? My intuition is: more verbose and grammatically strict languages would perform better.

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3 months ago
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Cadeau :

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3 months ago
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BigVolumeBrowser: a new 3D multi volume/mesh/point clould (SMLM) data viewer Hello everyone, Iโ€™d like to share with you another 3D viewer for FIJI, BigVolumeBrowser (full documentation link). Itโ€˜s a first initial public release, so there is still space for improvements. Le...

Finally, the first public release of #BigVolumeBrowser, so after teasers, you can try it yourself. For details, please check the announcement post (1/2)
forum.image.sc/t/bigvolumeb...

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3 months ago
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4Pi-SIMFLUX: 4Pi single-molecule localization microscopy with structured illumination - Nature Methods 4Pi-SIMFLUX is a single-molecule localization microscopy approach that achieves a near-isotropic resolution below 10โ€‰nm in whole mammalian cells.

We are happy to share our latest work, 4Pi-SIMFLUX, which combines structured illumination with interferometric detection to achieve near-isotropic 3D localization precision of 2โ€“3 nm and resolve sub-10 nm structural features across whole mammalian cells.
www.nature.com/articles/s41...
rdcu.be/eQVxt

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3 months ago
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Diving into video editing to update ABBA's tutorial. CapCut's free version is pretty great! (Now I will need to make peace with the sound of my own voice). Here's a preview:

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3 months ago

Very cool! We tried this, and it worked beautifully! (We did not require the second film; maybe we were lucky! )

There's just one thing we did not achieve yet: the gel was moving quite a lot. How do you prevent that ? Does PLL treatment work with the FEP film ?

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3 months ago
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StayRose: A photostable StayGold derivative redshifted by genetic code expansion Photobleaching of fluorescent proteins often limits the acquisition of high-quality images in microscopy. StayGold, a novel dimeric GFP recently monomerized through sequence engineering, addresses thi...

Our new paper is published in the Journal of Chemical Biology! ๐Ÿฎ We share StayRose, a red version of StayGold ๐Ÿฎ StayRose has an unnatural amino acid-based chromophore, and has the same immense photobleach-resistance as StayGold ๐Ÿ’ก

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4 months ago

I really want to get some time to play with it!

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4 months ago
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Droplet outbursts from onion cutting | PNAS Cutting onions often leads to tear-inducing aerosol release, yet the underlying mechanics remain poorly understood. In this work, via high-speed ch...

For those who like cooking and microscopy,

www.pnas.org/doi/10.1073/...

Thanks for the link @anjaliesch.bsky.social

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4 months ago
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My favorite thingy: Direct data streaming and stage control from Java!

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