Reproducible Computing Environments with Docker
This session introduces the Docker container system for running research software portably and reproducibly.
Join us for an in-person workshop on Reproducible Computing Environments with Docker on 26 August 2025 from 10:00 AM to 3:00 PM AEST at 21 Bedford Street, North Melbourne. This free event is exclusively for staff and students of the University of Melbourne and its affiliated organisations.
04.07.2025 00:00 — 👍 1 🔁 1 💬 1 📌 0
Upcoming working group meetings are:
• Metadata, annotation & data sharing: Mon March 24th at 08:00 GMT / 09:00 CET / 18:00 AEST
• Data formats & interoperability: Fri March 28th at 9:00 GMT / 10:00 CET / 19:00 AEST
21.03.2025 05:09 — 👍 0 🔁 0 💬 0 📌 0
IO-FAST (Initiative for FAIR spatial data) is aiming to develop standards for sharing spatial omics data and metadata.
If you work on spatial omics data analysis or data management, you can join the discussion here: iofast.zulipchat.com/join/kvkrqoa...
#bioinformatics #spatial #SpatialOmics
21.03.2025 05:09 — 👍 1 🔁 0 💬 1 📌 0
Source code of the TestBoard class generated from a Monday.com board
If you're a dev who uses #monday.com, you might be interested in mondantic, a library I developed for generating and populating Python dataclasses from your boards.
github.com/WEHI-Researc...
#monday.com #monday #pydantic #python
30.01.2025 02:45 — 👍 1 🔁 0 💬 0 📌 0
GitHub - WEHI-SODA-Hub/RdfCrate: Library for building RO-Crates using rdflib
Library for building RO-Crates using rdflib. Contribute to WEHI-SODA-Hub/RdfCrate development by creating an account on GitHub.
I've open sourced RdfCrate, a Python library I've been using to generate RO-Crates for research metadata.
It was motivated by finding that RDF triples are easier to work with than JSON-LD, and that rdflib is a brilliant foundation to build on top of.
github.com/WEHI-SODA-Hu...
#rocrate #rdf #rdm
18.01.2025 01:24 — 👍 1 🔁 0 💬 0 📌 0
Two hours of `gatk ValidateSamFile` can save 2 seconds of `samtools quickcheck`, as it turns out.
#bioinformatics
27.11.2024 07:46 — 👍 3 🔁 0 💬 0 📌 0
GA4GH sets standards and frames policies to expand genomic and health data use within a human rights framework.
https://www.ga4gh.org
The GHGA Consortium operates a national infrastructure for secure management of genomic data in Germany.
The de.NBI network provides bioinformatics services and comprehensive compute resources to researchers in the life sciences and biomedicine in Germany and Europe. Since August 2016 the German Node of ELIXIR, ELIXIR Germany, is run by de.NBI partners.
We are Europe's gateway to biological & biomedical imaging expertise. Visit our website: www.eurobioimaging.eu
Profile image by Olivia Harris, Cambridge University.
A life sciences research infrastructure, bringing together #bioinformatics resources across Europe to store, analyse, share and reuse data.
Australia's advanced imaging network. Enabling imaging science to unlock solutions to major challenges.
National Imaging Facility is enabled by the Australian Government's National Collaborative Research Infrastructure Strategy (#NCRIS)
anif.org.au
Australian Access Federation (AAF) is the Research and Higher Education Identity Access Federation of Australia. We are Australia’s #NCRIS capability building a system-wide approach to Trust and Identity, and the #ORCID Consortium Lead for Australia.
The Pawsey Supercomputing Research Centre is a critical piece of national research infrastructure providing supercomputing and expertise to accelerate science and innovation in Australia. Home of Setonix, the greenest supercomputer in Southern Hemisphere.
We're an academic team of Research Data Specialists enabling data-intensive and data-informed research across disciplines
@unimelb www.unimelb.edu.au/mdap
Supporting scientists across Australia with #geoscience research tools, data, services & leadership for a more sustainable & equitable future | #NCRIS enabled
auscope.org.au
Australia's largest network of microscopes and expertise – open to all Australian researchers & businesses, enabled by the Australian Government through NCRIS.
micro.org.au
myscope.training
youtube.com/c/MicroscopyAustralia
An independent organisation of distinguished Australian scientists, championing science for the benefit of all.
Read our landmark report: https://bit.ly/ASAF2035 #Science2035
Developing the next generation of Australian life science leaders through national & international collaboration 👩🔬 🔬🌏 www.emblaustralia.org
Open-source scientific and technical publishing system brought to you by posit.co.
github.com/quarto-dev/quarto-cli
Independent Member for Kooyong. Authorised by M. Ryan 145 Camberwell Rd, Hawthorn East, 3123 #Mon4Kooyong
https://linktr.ee/moniqueryan
Bioinformatics PhD candidate based in Adelaide, Australia. Working on transcriptomics in acute lymphoblastic leukaemia.
The Australian Bioinformatics and Computational Biology Society Inc. Promoting the science and profession of bioinformatics
https://www.abacbs.org
We make free, open-source software for data scientists like the RStudio IDE.
We're formerly known as RStudio. You can always download our open-source IDE here. https://posit.co/download/rstudio-desktop/
Enabling biological and biomedical image data sharing by reaching consensus together with the global imaging community on metadata harmonization and ontology use
