Now, with feeding and starvation :)
The random generation of food as particles is not the most realistic, but it moves the idea a step forward.
v0.5 of my #Rust #bioinformatics crate to create/query suffix arrays includes multi-threaded search. with 12 CPUs, I can load 3GB human genome into memory in 38s, find 1M 15-mers in 1.5s w/max memory use of 23G. Low-mem search using disk access takes 82s w/3.5G RAM. crates.io/crates/sufr
Hello BlueSky, it's been a while!
Next January, I will be running the Houston Half Marathon, and once again, I am fundraising for the Galveston Bay Foundation. One of the few organizations doing amazing work protecting the bay coastal environment! Help me reach my fundraising goal!
More here: fundraisers.hakuapp.com/adrien-2024
For those who wonder. I used deeptangle github.com/kirkegaardla... from Alberto Alonso and Julius Kirkegaard
We start from this kind of picture, using default training dataset
Shame gif and video don't work. The picture above should be animated
One of the little joy of being in a worm lab, is to come up with solution to help lab mates with repetitive tasks. Like processing many video of wells full of worms, detecting them and determine if they move (alive) or not (dead)
Two open positions! Looking for a #bioinformatics #postdoc and a #laboratory #technician. Interested in joining the team? Check out www.microbial-ecology.net/open-positions
Ah! I started with R because it was easier for me 😅
Thanks for the invite looks a lot like twitter
Hello world
