Adrien Assié

Now, with feeding and starvation :)
The random generation of food as particles is not the most realistic, but it moves the idea a step forward.

23.11.2024 20:51 — 👍 2    🔁 0    💬 0    📌 0

crates.io: Rust Package Registry

v0.5 of my #Rust #bioinformatics crate to create/query suffix arrays includes multi-threaded search. with 12 CPUs, I can load 3GB human genome into memory in 38s, find 1M 15-mers in 1.5s w/max memory use of 23G. Low-mem search using disk access takes 82s w/3.5G RAM. crates.io/crates/sufr

22.11.2024 23:02 — 👍 18    🔁 4    💬 1    📌 0

Hello BlueSky, it's been a while!

22.11.2024 22:40 — 👍 3    🔁 0    💬 0    📌 0

Houston Marathon Help me raise money for the Galveston Bay Foundation, one of the few organisation doing coastal conservation in the Houston Bay Area. They have several amazing projects related to habitat restora...

Next January, I will be running the Houston Half Marathon, and once again, I am fundraising for the Galveston Bay Foundation. One of the few organizations doing amazing work protecting the bay coastal environment! Help me reach my fundraising goal!
More here: fundraisers.hakuapp.com/adrien-2024

10.08.2024 17:59 — 👍 2    🔁 0    💬 0    📌 0

GitHub - kirkegaardlab/deeptangle: Code implementation of the detection network capable of dealing w... Code implementation of the detection network capable of dealing with many overlapping spline bodies. - GitHub - kirkegaardlab/deeptangle: Code implementation of the detection network capable of dea...

For those who wonder. I used deeptangle github.com/kirkegaardla... from Alberto Alonso and Julius Kirkegaard

17.11.2023 16:41 — 👍 0    🔁 0    💬 0    📌 0

We start from this kind of picture, using default training dataset

17.11.2023 16:38 — 👍 0    🔁 0    💬 0    📌 0

Shame gif and video don't work. The picture above should be animated

17.11.2023 16:34 — 👍 0    🔁 0    💬 0    📌 0

One of the little joy of being in a worm lab, is to come up with solution to help lab mates with repetitive tasks. Like processing many video of wells full of worms, detecting them and determine if they move (alive) or not (dead)

17.11.2023 16:33 — 👍 9    🔁 1    💬 3    📌 0

cartoon depicting interactions between viruses, bacteria and their commons host

Two open positions! Looking for a #bioinformatics #postdoc and a #laboratory #technician. Interested in joining the team? Check out www.microbial-ecology.net/open-positions

12.09.2023 14:27 — 👍 12    🔁 14    💬 0    📌 2

Ah! I started with R because it was easier for me 😅

24.08.2023 20:15 — 👍 0    🔁 0    💬 0    📌 0

Thanks for the invite looks a lot like twitter

24.08.2023 18:03 — 👍 0    🔁 0    💬 0    📌 0

Hello world

23.08.2023 12:52 — 👍 7    🔁 0    💬 1    📌 0