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Simona Cristea

@simocristea.bsky.social

Genomics, LLMs, spatial cancer evo | Group leader @DanaFarber @Harvard | Head of Data Science at Hale Center for Pancreatic Cancer | PhD @eth

379 Followers  |  33 Following  |  20 Posts  |  Joined: 24.11.2024  |  1.7839

Latest posts by simocristea.bsky.social on Bluesky

for anybody visiting France for >1 hour, itโ€™s plain obvious why:
- food is fresh and real
- people walk a lot
- people enjoy life

25.04.2025 04:15 โ€” ๐Ÿ‘ 13    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

why is that?

23.01.2025 02:59 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

If youโ€™re having a bad science day, remember that Victor Ambros was denied tenure at Harvard only one year after discovering microRNAs - for which he was ultimately awarded the Nobel Prize.

05.01.2025 00:04 โ€” ๐Ÿ‘ 5    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

thank you!

07.12.2024 22:13 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

100 ๐Ÿฆ‹ followes ๐ŸŽŠ๐Ÿ™๐Ÿ™

07.12.2024 04:26 โ€” ๐Ÿ‘ 3    ๐Ÿ” 1    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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This paper looks at single cell DNA seq data from normal & cancer tissues and computes how evolution is changing within each tissue.

In most cancers and half of normal tissues, the paper rejects a constant evolutionary rate - potentially explainable by mutations in driver genes.

t.co/P3LgFWbHMG

05.12.2024 02:08 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
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Contrary to what was thought - that immune cells cannot infiltrate the brain - anticancer active T cells do exist in the brain, specifically inside the bone marrow in the skull.

These exact cells might be the future of immune therapies against brain cancers.

www.nature.com/articles/d41...

03.12.2024 00:22 โ€” ๐Ÿ‘ 8    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Preview
Dadโ€™s microbiome can affect offspringโ€™s health โ€” in mice Hear the biggest stories from the world of science | 1 May 2024

thereโ€™s also a podcast about this super cool study:

www.nature.com/articles/d41...

01.12.2024 22:00 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Shibboleth Authentication Request

Nature News & Views of this study:

www-nature-com.ezp-prod1.hul.harvard.edu/articles/d41...

01.12.2024 21:51 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

However, it is important to keep in mind that people in different parts of the world do have different genetic make-ups. So, it might be that the difference in risk is not entirely environmentally-driven. Future studies will for sure look into this aspect specifically.

01.12.2024 21:51 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

They found a mutational signature (aka a specific pattern of mutations) more common in locations associated with a higher risk of kidney cancer than in those with a lower risk. This might indicate that these higher-risk locations are associated with a higher exposure to an unknown mutagen.

01.12.2024 21:51 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

In other words, how much of this risk can we potentially modulate? Also, what exactly in the environment is causing less/more risk for a cancer type?

A recent study did exactly this. The authors looked at 900 kidney tumors from different parts of the world.

01.12.2024 21:51 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

What if we looked at the correlation between somatic mutation composition and tumor incidence from cancers in different parts of the world?

Then we can get an idea of what fraction of cancer incidence is driven by the exact environment we live in.

01.12.2024 21:51 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Investing in sequencing tumors from multiple parts of the world is not wasting money. In fact, it benefits everybody

Hereโ€™s why: in practice, we have no idea why/when cells in our body mutate, either healthy aging or malignant shifts

How much does the environment contribute?

01.12.2024 21:51 โ€” ๐Ÿ‘ 5    ๐Ÿ” 1    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

i think this is one of the smaller problems of peer-review ๐Ÿ˜„

01.12.2024 04:05 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

why? is it known by how much they can deviate from individual baseline?

01.12.2024 04:04 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 0

๐Ÿ™‹๐Ÿปโ€โ™€๏ธ

27.11.2024 00:53 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Hi Blusesky people, any advice how to quickly change my feed to less nature/animal photos and more science content? Like how can nudge this algo so it learns what to show?

26.11.2024 04:05 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

wonderfully put! itโ€™s an unbelievable time for medical progress

26.11.2024 04:01 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

congrats! my first like/comment on here ๐Ÿ˜…

25.11.2024 01:50 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

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