📆 Join next week's webinar on Salmonella Typhia genomics & #AMR surveillance being given by @msmicrobiocode.bsky.social
27.01.2026 11:46 — 👍 3 🔁 2 💬 0 📌 0
2026-27 Project (Dyson & Mostowy & Knight) - MRC London Intercollegiate Doctoral Training Partnership Studentships
PHACTS: Unravelling PHAge-baCTeria-host immune dynamicS to inform phage therapy SUPERVISORY TEAM Supervisor Dr Zoe Dyson...
London interdisciplinary #PhD position now open with myself, @sergemostowylab.bsky.social, & @gmknght.bsky.social on #phage -bacteria-host immune dynamics for WHO priority bacterial pathogens #Klebsiella, #Shigella, and #Staph. Combines cellular microbiology, genomics, & mathematical modelling.
13.11.2025 11:11 — 👍 9 🔁 12 💬 0 📌 0
PhD position (London, UK)
Generating microbiology data and paired mathematical modelling
with @msmicrobiocode.bsky.social @gmknght.bsky.social @sergemostowylab.bsky.social
at @lshtm.bsky.social
More details: http://iddjobs.org/jobs/2405
11.11.2025 23:58 — 👍 3 🔁 1 💬 0 📌 0
AMRnet: a data visualization platform to interactively explore pathogen variants and antimicrobial resistance
Abstract. Antimicrobial resistance (AMR) poses a substantial threat to global public health. Whole genome sequencing is increasingly used as a core method
🚨 New paper out on @narjournal.bsky.social.
Many thanks to everyone involved, especially the project leader Professor @katholt.bsky.social and the wonderful #AMRnet team: @msmicrobiocode.bsky.social, Vandana Sharma, Mary Maranga, Ebenezer Foster-Nyarko, Megan Carey
academic.oup.com/nar/advance-...
06.11.2025 19:33 — 👍 5 🔁 3 💬 0 📌 0
Distribution of capsule and O types in Klebsiella pneumoniae causing neonatal sepsis in Africa and South Asia: meta-analysis of genome-predicted serotype prevalence and potential vaccine coverage https://www.medrxiv.org/content/10.1101/2025.06.28.25330253v1
30.06.2025 16:43 — 👍 1 🔁 1 💬 0 📌 0
🚨 Last chance to sign up for an online space at Thursday's symposium on target trial emulation (TTE) and other frameworks
Sign up 🔽
23.06.2025 13:21 — 👍 1 🔁 2 💬 0 📌 0
Wonderful presentation @nisbetalice.bsky.social !
25.06.2025 09:32 — 👍 2 🔁 0 💬 0 📌 0
Coming up next at #I3S #I3Scongress is @nisbetalice.bsky.social showing a summary of 20 years of #typhoidal #Salmonella in England & Wales. She is excited to present here as she prepares this for publication and as this is her first international talk. We are hanging around if you have any Qs.
25.06.2025 09:30 — 👍 10 🔁 6 💬 1 📌 0
Outbreak of Ceftriaxone-Resistant <em>Salmonella enterica</em> Serovar Typhi, Bangladesh, 2024
Ceftriaxone-Resistant <em>Salmonella</em> Typhi, Bangladesh
One ceftriaxone-resistant #typhoid case last year set us on a path that is now live on Emerging Infectious Diseases.
47 cases in months, resistance rose from 0 to 5%. We spoke with patients, sequenced samples. 4.3.1.2.B1 lineage+blaCTX-M-15 on pCROB1. #AMR #PublicHealth
wwwnc.cdc.gov/eid/article/...
23.06.2025 16:19 — 👍 2 🔁 6 💬 1 📌 0
🥇 Congratulations to @msmicrobiocode.bsky.social
who was one of the winners of the @lshtmamrcentre.bsky.social Publication Prize
She received the Staff Prize for her work analysing AMR typhoid infections in Bangladesh, Nepal, and Malawi
Find out why 🔽
www.lshtm.ac.uk/research/cen...
12.05.2025 08:59 — 👍 9 🔁 3 💬 2 📌 0
A huge thank you to all involved - especially members of the Global Typhoid Genomics Consortium, @katholt.bsky.social , @meganecarey.bsky.social , @louisecerdeira.bsky.social, and Vandana Sharma!
09.05.2025 13:18 — 👍 4 🔁 1 💬 0 📌 0
📣 🎉 Congratulations to Ms Gladys and @msmicrobiocode.bsky.social on winning our 2025 Publication Prize at @lshtm.bsky.social 🏆
Read more about their winning papers and impactful AMR research🔬 👇
bit.ly/4iM7uCh
06.05.2025 13:07 — 👍 12 🔁 4 💬 1 📌 0
@msmicrobiocode.bsky.social won the Staff Prize for her work revealing that most AMR typhoid infections in Bangladesh, Nepal, and Malawi are driven by ongoing local transmission of existing resistant strains—not new variants.
06.05.2025 13:07 — 👍 8 🔁 2 💬 1 📌 0
Good luck ☺️
02.02.2025 11:42 — 👍 1 🔁 0 💬 0 📌 0
Home
A tool for generating consensus long-read assemblies for bacterial genomes - rrwick/Autocycler
New year, new assemblies!
I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes!
It's the successor to Trycycler, designed to be faster and less reliant on user intervention.
Check it out: github.com/rrwick/Autoc...
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31.12.2024 23:43 — 👍 156 🔁 97 💬 2 📌 3
Bacterial geneticist 🧫 🦠 🧬 focusing on #Shigella, #enteric #pathogens & #phage. Using host signals & #organoids to study #pathogenesis. Assist Prof at USUHS. Views my own. https://medschool.usuhs.edu/profile/christina-faherty-phd
Project coordinator @Holt Lab, LSHTM
Health Data Science | 📊 DataViz | 📖✨️ | 🐾
LinkedIn: linkedin.com/in/darakhshannehal
GitHub: github.com/darakhshannehal
Acting Assistant Professor of Lab Medicine at UW. Functional genomics and molecular epidemiology to study syphilis. 🇨🇦🇺🇸
@downingtim@genomic.social - also downingtim.bsky.social - Head of #Genomics at The #PirbrightInstitute (UK). He/him. All posts (etc) are in a personal capacity. I log in regularly, nearly every month. #Andacyclist #genomics #virus #pathogen #evolution
Team located on the University of Strasbourg campus (IBMC) with a remaining link with the Institut Pasteur.
Shigella, neutrophils, oxygen, RNA among other favorite research topics
And all this science I don't understand, it's just my job five days a week.
Professor of Microbiome and Systems Biology @ Nottingham Trent University. 🏳️🌈
Working predominantly on the human gut microbiota.
All views my own.
Biochemist 🧪| Empowering Life Scientists and Science Communicators to Achieve Their Career Goals | UCLA PhD + NIH Alum | Pharma R&D @GSK + @AstraZeneca 💊 | #SciComm Director ✍️| Career Coach | Star Trek | Sherlock Holmes | 🎹 | https://larrymillerphd.com
Bioinformatician @ MDU PHL, Melbourne
Researcher at Uni Cambridge working on bacterial evolution and AI
Research Fellow in the @halllab.bsky.social at @unibirmingham.bsky.social | microbiomes | microbial genomics | @amiposts.bsky.social OHAG member👩🏼💻 💩 🧬
The Australian Bioinformatics and Computational Biology Society Inc. Promoting the science and profession of bioinformatics
https://www.abacbs.org
4th Year PhD Student 👩🔬 MMB DTP 🧬 Langridge lab 🦆 Interested in all things Typhoidal Salmonella 🦠
Research fellow @lshtm.bsky.social working on malaria genomics and transmission blocking drugs | 🇧🇪 in 🇬🇧
PhD student at Cambridge | AMR | genomic surveillance | microbiome
Assistant Professor at Tufts Medicine studying microbes, brains, and the immune system 🚽🦠🧠
Fermenter, gardener, Zen Buddhist. Ask me about #julialang!
🎙️: https://audiommunity.org
🌎: https://blog.bonham.ch
💻: https://GitHub.com/kescobo
Bioinformatics Scientist @theiagen.bsky.social
Likely swimming in a sea of pathogen genomes 🏊🧬 or riding my bike 🚴
Public Health | Infectious Diseases | Bioinformatics | Software Dev
Group leader in the Virology Department at Institut Pasteur
Algae enthusiast, Associate Professor @UniofExeter, joint appointment @thembauk
Algal ecophysiology | signalling | microbiome | molecular microbiology | diatoms!
