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Charles Wei

@rositea.bsky.social

PhD student at Cambridge | AMR | genomic surveillance | microbiome

62 Followers  |  194 Following  |  1 Posts  |  Joined: 08.11.2024  |  1.5086

Latest posts by rositea.bsky.social on Bluesky

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BaGPipe: an automated, reproducible, and flexible pipeline for bacterial genome-wide association studies Microbial genome-wide association study (GWAS) tools often require manual data processing steps, lack comprehensive workflows, and are limited by scalability issues, thus hindering the exploration of ...

Tired of fragmented bacterial GWAS workflows? Try BaGPipe (Bacterial GWAS Pipeline)โ€”a fully automated, flexible Nextflow pipeline integrating Pyseer for streamlined association studies. Reproducible. Scalable. Efficient. doi.org/10.1101/2025...
#Nextflow #BacterialGWAS #AMR #Bioinformatics

02.03.2025 22:05 โ€” ๐Ÿ‘ 12    ๐Ÿ” 7    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

Hello world! After a year in the making, the Pathogen Dynamics Unit is ready to launch! Check out our website (pdu.gen.cam.ac.uk) and follow the team (bsky.app/profile/did:...) to keep up with the latest from our infectious disease supergroup based at @geneticscam.bsky.social

20.12.2024 12:28 โ€” ๐Ÿ‘ 22    ๐Ÿ” 12    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 2

@rositea is following 20 prominent accounts