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LaBella Lab

@lablabella.bsky.social

LaBella Lab studies codon usage (aka "silent" genetic changes) and evolution from humans to fungi | Bioinformatics & Genomics | UNC Charlotte Run by Abbe LaBella Opinions are my own and do not reflect any affiliated organization.

913 Followers  |  252 Following  |  216 Posts  |  Joined: 16.08.2023  |  2.3099

Latest posts by lablabella.bsky.social on Bluesky

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Convergent evolution of aerobic fermentation through divergent mechanisms acting on key shared glycolytic genes As the tree of life becomes increasingly accessible to molecular investigations, describing mechanisms underlying evolutionary convergence and constraint will be crucial to understanding diversificati...

In a preprint with the @rokaslab.bsky.social , @linder-surprise.bsky.social developed a high-throughput extracellular acidification rate (ECAR) assay to evaluate glycolytic rate. We highlight how genetic traits, such as aerobic fermentation, can arise convergently with strong constraints. ๐Ÿงฌ

07.10.2025 17:14 โ€” ๐Ÿ‘ 2    ๐Ÿ” 1    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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a man sitting in front of a dell monitor ALT: a man sitting in front of a dell monitor

Some days I wish I had gotten a PhD in "Canvas Administration"

Nothing says professor like standing in a classroom full of students and not knowing how to unlock a module properly

07.10.2025 18:47 โ€” ๐Ÿ‘ 4    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
GBE | From Trees to Traits: A Review of Advances in PhyloG2P Methods and Future Directions

GBE | From Trees to Traits: A Review of Advances in PhyloG2P Methods and Future Directions

In a new Review article in GBE, @scientific-arlie.bsky.social et al delve into the growing field of phylogenetic genotype to phenotype mapping (PhyloG2P), discussing advances and future directions for using phylogenomic data to map traits to genomes

๐Ÿ”— doi.org/10.1093/gbe/evaf150

#genome #evolution

16.09.2025 09:19 โ€” ๐Ÿ‘ 15    ๐Ÿ” 6    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 1
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Dr. White @raw937.bsky.social discusses bats ๐Ÿฆ‡ and viruses at the Biomedical Symposium

15.09.2025 17:17 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Brad Bower of the NIH outlines the Strategic Plan for Data Science

Do you share your data in a usable way?

Where can AI take us next?

15.09.2025 14:43 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Excited for the Charlotte Biomedical Symposium today!

Intro to CIPHER by Dr. Jamie's featuring a @morgancarterphd.bsky.social Carter lab trainee

15.09.2025 13:40 โ€” ๐Ÿ‘ 4    ๐Ÿ” 1    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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We are hiring! Oxford biology has three associate professorships available as we move to new state-of-the-art facilities

Three Associate Professor (or Professor) positions available at Oxford Biology. Come be my colleague! www.biology.ox.ac.uk/article/we-a...

15.09.2025 11:22 โ€” ๐Ÿ‘ 88    ๐Ÿ” 76    ๐Ÿ’ฌ 4    ๐Ÿ“Œ 2
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โœจ Are you a pre-tenure faculty or advanced postdoc with an academic offer in hand? ๐ŸŽ“ 3 days left to apply for the SDB New Faculty Boot Camp! ๐Ÿš€ Deadline: Aug 22, 2025 Apply here ๐Ÿ‘‰ tinyurl.com/SDBFaculty

20.08.2025 13:45 โ€” ๐Ÿ‘ 18    ๐Ÿ” 16    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 2

I'm hiring a postdoc to work in theoretical / computational phylogenomics! More info at tinyurl.com/63hb5ew8. Please share!

21.08.2025 12:52 โ€” ๐Ÿ‘ 24    ๐Ÿ” 38    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

I have
NIGMS R35, impact score 12
NIHGRI R21, 4th percentile
NHGRI R01, 7th percentile (co-I)
and it seems like none will be funded. 0/3.

PO (who has been very helpful) said "Unfortunately, I do not expect this application will be selected for funding in FY25."

๐Ÿ˜ญ

19.08.2025 23:30 โ€” ๐Ÿ‘ 159    ๐Ÿ” 43    ๐Ÿ’ฌ 42    ๐Ÿ“Œ 16
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๐“๐ก๐ž ๐…๐ฎ๐ญ๐ฎ๐ซ๐ž ๐ข๐ฌ ๐…๐ฎ๐ง๐ ๐ข ๐€๐ฐ๐š๐ซ๐ ๐ข๐ฌ ๐›๐š๐œ๐คโ€”๐ซ๐ž๐š๐๐ฒ ๐ญ๐จ ๐›๐š๐œ๐ค ๐ญ๐ก๐ž ๐ง๐ž๐ฑ๐ญ ๐ฐ๐š๐ฏ๐ž ๐จ๐Ÿ ๐Ÿ๐ฎ๐ง๐ ๐ข ๐ข๐ง๐ง๐จ๐ฏ๐š๐ญ๐จ๐ซ๐ฌ! ๐ŸŒ๐Ÿ„

The awards mission is to ๐œ๐š๐ญ๐š๐ฅ๐ฒ๐ณ๐ž ๐ ๐ซ๐จ๐ฎ๐ง๐๐›๐ซ๐ž๐š๐ค๐ข๐ง๐  ๐Ÿ๐ฎ๐ง๐ ๐š๐ฅ ๐ข๐ง๐ง๐จ๐ฏ๐š๐ญ๐ข๐จ๐ง๐ฌ that address some of humanityโ€™s biggest environmental challengesโ€”and to support the ๐ฌ๐ญ๐š๐ซ๐ญ๐ฎ๐ฉ๐ฌ ๐š๐ง๐ ๐ฌ๐œ๐ข๐ž๐ง๐œ๐ž ๐ž๐ง๐ญ๐ซ๐ž๐ฉ๐ซ๐ž๐ง๐ž๐ฎ๐ซ๐ฌ pioneering these solutions

21.08.2025 07:31 โ€” ๐Ÿ‘ 5    ๐Ÿ” 1    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Ew... @theathletic.com

Do I "remember" the great Ilona Maher?!

I never forgot about her. She's been kicking ass this whole time!

Do better... not all your readers instantly forget about half of all athletes because of their gender

21.08.2025 11:56 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

If interested in this or other ways that our lab uses Notion for recordkeeping and project management, Iโ€™ve now added a resource about it to our lab website.
#NewPI ๐Ÿงช๐Ÿฆ 
pages.charlotte.edu/carterlab/re...

15.08.2025 12:54 โ€” ๐Ÿ‘ 12    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Cannot stop laughing at this

14.08.2025 03:03 โ€” ๐Ÿ‘ 239    ๐Ÿ” 96    ๐Ÿ’ฌ 3    ๐Ÿ“Œ 12
Canada Excellence Research Chair in Biodiversity Genomics Canada Excellence Research Chair in Biodiversity Genomics

Please help us spread the word! Please amplify!

We are searching for an associate or full professor (Canada Excellence Research Chair) in Biodiversity Genomics at the University of Guelph! ๐ŸŸ๐ŸŒฟ๐Ÿฆ ๐Ÿœ๐Ÿธ๐Ÿ

Applications are due October 6 2025.

careers.uoguelph.ca/job/Guelph-C...

#AcademicJobs #EvoBio

14.08.2025 04:13 โ€” ๐Ÿ‘ 60    ๐Ÿ” 111    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 2
Recruiting an NSF-funded Post-Doctoral Researcher in EEB
The Budke Lab in the Department of Ecology & Evolutionary Biology at the University of Tennessee (http://jmbudke.github.io/) is seeking a Post-Doctoral Research Associate to work on an NSF-funded project. This project is investigating morphological evolution in a phylogenetic context using moss plants as the experimental system. 
The research responsibilities will include (1) assembling morphological datasets using the literature and herbarium specimens, (2) compiling DNA sequence datasets from publicly available resources and laboratory-based methods using herbarium specimens, and (3) combining these data to analyze the evolution of morphological structures across a phylogeny. 
Opportunities will also be available to develop novel research questions focusing on the functional morphology, physiology, and evolution of the parent-offspring relationship in mosses. Supervising and mentoring undergraduate researchers in both the laboratory and herbarium will be required. 
An additional aim of this project is to build awareness of and appreciation for plants and botanical natural history collections. As part of the team, the postdoc will participate in hands-on outreach events, such as Darwin Day. The postdoc will also co-lead a May-term course for undergraduate students on collections-based research.
Apply by 17 August 2025 for full consideration.

Recruiting an NSF-funded Post-Doctoral Researcher in EEB The Budke Lab in the Department of Ecology & Evolutionary Biology at the University of Tennessee (http://jmbudke.github.io/) is seeking a Post-Doctoral Research Associate to work on an NSF-funded project. This project is investigating morphological evolution in a phylogenetic context using moss plants as the experimental system. The research responsibilities will include (1) assembling morphological datasets using the literature and herbarium specimens, (2) compiling DNA sequence datasets from publicly available resources and laboratory-based methods using herbarium specimens, and (3) combining these data to analyze the evolution of morphological structures across a phylogeny. Opportunities will also be available to develop novel research questions focusing on the functional morphology, physiology, and evolution of the parent-offspring relationship in mosses. Supervising and mentoring undergraduate researchers in both the laboratory and herbarium will be required. An additional aim of this project is to build awareness of and appreciation for plants and botanical natural history collections. As part of the team, the postdoc will participate in hands-on outreach events, such as Darwin Day. The postdoc will also co-lead a May-term course for undergraduate students on collections-based research. Apply by 17 August 2025 for full consideration.

Looking for a #postdoc in evolutionary biology?
Come join the Budke Lab! Read more about the lab jmbudke.github.io & apply at this link fa-ewlq-saasfaprod1.fa.ocs.oraclecloud.com/hcmUI/Candid...
This is the last weekend to apply before applications will be evaluated and zoom interviews scheduled.

14.08.2025 12:56 โ€” ๐Ÿ‘ 12    ๐Ÿ” 15    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Just to give the TL;DR on this one:

*The* main purpose of the EO is to move funding priorities and decisions away from experts and career professionals over to political appointees. With the ultimate power held by Vought / OMB.

07.08.2025 22:55 โ€” ๐Ÿ‘ 505    ๐Ÿ” 294    ๐Ÿ’ฌ 19    ๐Ÿ“Œ 27
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New executive order puts all grants under political control All new funding on hold until Trump administration can cancel any previously funded grants.

New ArsTechnica story about the new steaming pile of Executive Order...

arstechnica.com/science/2025...

08.08.2025 00:30 โ€” ๐Ÿ‘ 155    ๐Ÿ” 84    ๐Ÿ’ฌ 12    ๐Ÿ“Œ 10
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Phyling: phylogenetic inference from annotated genomes Phyling is a fast, scalable, and user-friendly tool supporting phylogenomic reconstruction of species phylogenies directly from protein-encoded genomic data. It identifies orthologous genes by searchi...

New #preprint from talented graduate student for a workflow we have been using for a while into a formal usage www.biorxiv.org/content/10.1...

06.08.2025 18:43 โ€” ๐Ÿ‘ 30    ๐Ÿ” 12    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Whole-genome sequencing of 490,640 UK Biobank participants - Nature A study reports whole-genome sequences for 490,640 participants from the UK Biobank and combines these data with phenotypic data to provide new insights into the relationship between human variation a...

โœ… Published in @natureportfolio.nature.com today, the paper describing the initial whole-genome sequencing analysis of 500,000 UK Biobank participants.

Read here: www.nature.com/articles/s41...

06.08.2025 15:17 โ€” ๐Ÿ‘ 53    ๐Ÿ” 28    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 2

I took several screenshots... It's impossible to capture anyone over zoom without it looking goofy <3

07.08.2025 12:21 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Amazing work from Dr. Anne Hatmaker @annemakerofhats.bsky.social at @canfunnet.bsky.social #CFN25

She takes us on a deep dive into the diversity of Penicillium isolates from diverse habitats

06.08.2025 20:06 โ€” ๐Ÿ‘ 16    ๐Ÿ” 5    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Today's the day!! If you are attending #CFN25 then check out my talk this afternoon at 4pm Eastern, 3pm Central! I'll be talking about Penicillium in the Fungal Genetics and Genomics III session ๐Ÿ„ Looking forward to virtually seeing you soon!

06.08.2025 14:44 โ€” ๐Ÿ‘ 5    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Excited to tune into the CanFunNet meeting! @canfunnet.bsky.social

Check out our trainee Isha Jain's presentation on Friday in the Fungal Genetics & Genomics VI starting at 3:50pm

#CFN25

Great introduction to CanFunNet with Dr. Horianopoulos @linder-surprise.bsky.social

06.08.2025 15:23 โ€” ๐Ÿ‘ 4    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Ameya Jalihal of the @gladfelterlab.bsky.social asks how you maintain asynchrony in nuclear division?

Well... The cell isn't a free for all diffusion. Cellular condensates are critical to nuclear division asynchrony

Read more here: pmc.ncbi.nlm.nih.gov/articles/PMC...

28.07.2025 19:44 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Bacterial metabolites induce cell wall remodeling, antifungal resistance, and immune recognition of commensal fungi The fungus Candida albicans commensally colonizes mucosal surfaces in healthy individuals but can cause both superficial mucosal and life-threatening disseminated infections. The balance between comme...

Today is a good day to read our preprint about Candida albicans interactions with its neighbors! www.biorxiv.org/content/10.1... led by the amazing Faith Davis and a fantastic team of collaborators @kylaost.bsky.social @shannonrighi.bsky.social @balunaslab.bsky.social @tuowang.bsky.social

28.07.2025 14:04 โ€” ๐Ÿ‘ 32    ๐Ÿ” 11    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Audrey Williams of the @gladfelterlab.bsky.social uses GEMs ๐Ÿ’Ž to understand how the fungus A. pullulens can deal with incredibly high salt ๐Ÿง‚ concentrations

28.07.2025 16:32 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Deletion of core septin gene aspB in Aspergillus fumigatus results in fungicidal activity of caspofungin Septins are a family of GTP-binding proteins found in many eukaryotic lineages. Although highly conserved throughout many eukaryotes, their functions vary across species. In Aspergillus fumigatus, the...

Read more about this really cool story about the role of septins in enhancing the action of caspofungin antifungal activity

@mycorican.bsky.social

pmc.ncbi.nlm.nih.gov/articles/PMC...

28.07.2025 14:44 โ€” ๐Ÿ‘ 3    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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@mycorican.bsky.social presents at the Tri-I symposium at Duke.

He begins by encouraging us to be more like Aspergillus... Resilient and adaptable

28.07.2025 14:29 โ€” ๐Ÿ‘ 10    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 1
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Woods Hole holds such a special place in my life and career.

WHOi summer program

Taking ALVIN home

Guest lecture at the MBL physiology course

@mblscience.bsky.social

Can't wait to come back!

24.07.2025 14:40 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

@lablabella is following 20 prominent accounts