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LaBella Lab

@lablabella.bsky.social

LaBella Lab studies codon usage (aka "silent" genetic changes) and evolution from humans to fungi | Bioinformatics & Genomics | UNC Charlotte Run by Abbe LaBella Opinions are my own and do not reflect any affiliated organization.

901 Followers  |  251 Following  |  208 Posts  |  Joined: 16.08.2023  |  1.5688

Latest posts by lablabella.bsky.social on Bluesky

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Ameya Jalihal of the @gladfelterlab.bsky.social asks how you maintain asynchrony in nuclear division?

Well... The cell isn't a free for all diffusion. Cellular condensates are critical to nuclear division asynchrony

Read more here: pmc.ncbi.nlm.nih.gov/articles/PMC...

28.07.2025 19:44 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Bacterial metabolites induce cell wall remodeling, antifungal resistance, and immune recognition of commensal fungi The fungus Candida albicans commensally colonizes mucosal surfaces in healthy individuals but can cause both superficial mucosal and life-threatening disseminated infections. The balance between comme...

Today is a good day to read our preprint about Candida albicans interactions with its neighbors! www.biorxiv.org/content/10.1... led by the amazing Faith Davis and a fantastic team of collaborators @kylaost.bsky.social @shannonrighi.bsky.social @balunaslab.bsky.social @tuowang.bsky.social

28.07.2025 14:04 β€” πŸ‘ 24    πŸ” 7    πŸ’¬ 1    πŸ“Œ 0
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Audrey Williams of the @gladfelterlab.bsky.social uses GEMs πŸ’Ž to understand how the fungus A. pullulens can deal with incredibly high salt πŸ§‚ concentrations

28.07.2025 16:32 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Deletion of core septin gene aspB in Aspergillus fumigatus results in fungicidal activity of caspofungin Septins are a family of GTP-binding proteins found in many eukaryotic lineages. Although highly conserved throughout many eukaryotes, their functions vary across species. In Aspergillus fumigatus, the...

Read more about this really cool story about the role of septins in enhancing the action of caspofungin antifungal activity

@mycorican.bsky.social

pmc.ncbi.nlm.nih.gov/articles/PMC...

28.07.2025 14:44 β€” πŸ‘ 3    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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@mycorican.bsky.social presents at the Tri-I symposium at Duke.

He begins by encouraging us to be more like Aspergillus... Resilient and adaptable

28.07.2025 14:29 β€” πŸ‘ 11    πŸ” 0    πŸ’¬ 1    πŸ“Œ 1
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Woods Hole holds such a special place in my life and career.

WHOi summer program

Taking ALVIN home

Guest lecture at the MBL physiology course

@mblscience.bsky.social

Can't wait to come back!

24.07.2025 14:40 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Beach scene with β€œvisit your village homosexual” written in the style of a tourism poster

Beach scene with β€œvisit your village homosexual” written in the style of a tourism poster

Illuminati eye over the text β€œi believe in the one book theory”

Illuminati eye over the text β€œi believe in the one book theory”

Due to popular demand, we’ve introduced some new merch designs, including the highly requested village homosexual

ifbookspod.dashery.com

17.07.2025 12:50 β€” πŸ‘ 874    πŸ” 81    πŸ’¬ 29    πŸ“Œ 6
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Navigating Bluesky: A Researcher's Quick Guide to Building Your Academic Network

Oh and welcome to Bluesky to those joining during #2025ISMPMI!

Tips:
Reposts matter more than likes here for increasing visibility (no algorithm).
Follow feeds for collected posts on specific topics (like Plant Science or Microbiology).

Other tips:
www.wiley.com/en-us/networ...

17.07.2025 09:24 β€” πŸ‘ 8    πŸ” 6    πŸ’¬ 0    πŸ“Œ 0

OrthoFinder just dropped a major update

It’s faster, more accurate, and ready for thousands of genomes

Let’s break it down (1/10)

github.com/OrthoFinder/...
www.biorxiv.org/content/10.1...

16.07.2025 17:51 β€” πŸ‘ 125    πŸ” 70    πŸ’¬ 1    πŸ“Œ 1
Me, a white woman with fluffy curly hair and  striped dress standing in front of a scientific poster with the figures from the linked preprint

Me, a white woman with fluffy curly hair and striped dress standing in front of a scientific poster with the figures from the linked preprint

Thanks to those who stopped by at #2025ISMPMI to learn about bacteria that live inside fungi.

It was great to hear your questions. So much to do in this area!!

For those not here, please check out our preprint: www.biorxiv.org/content/10.1...
Or mini-review: apsjournals.apsnet.org/doi/10.1094/...

17.07.2025 14:13 β€” πŸ‘ 28    πŸ” 3    πŸ’¬ 1    πŸ“Œ 0
Too poor to science: How wealth determines who succeeds in STEM From student to researcher, a career in science can come with a high price tag. This Perspective explores how persistent financial barriers limit who can succeed in science, revealing how wealth shape...

I've wanted to write this article for years. About my and other's struggles to even survive sometime in #academia. Thank you to the amazing editors at @plosbiology.org that gave me the forum to write this piece. #science

24.06.2025 18:09 β€” πŸ‘ 342    πŸ” 176    πŸ’¬ 19    πŸ“Œ 42

The Meselson and Stahl experiment demonstrated in 1958 that DNA replicated semi-conservatively.

Meaning, each of the two strands of DNA serves as a template for a new copy to made of the complementary strand.

Foundational finding, elegant experimental design.

08.07.2025 01:49 β€” πŸ‘ 213    πŸ” 64    πŸ’¬ 11    πŸ“Œ 4

If I spend 2 hours thinking about a grant proposal but only end up with 2 lines...

Did I work for 2 hours or 2 minutes? ⏲️

27.06.2025 16:25 β€” πŸ‘ 4    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
In this light microscopy image of dividing cells within a Drosophila embryo, multiple centrosomes are labeled in cyan. Each centrosome is surrounded by a concentration of orange fluorescent dots, showing the localization of a model mRNA via single molecule detection.

In this light microscopy image of dividing cells within a Drosophila embryo, multiple centrosomes are labeled in cyan. Each centrosome is surrounded by a concentration of orange fluorescent dots, showing the localization of a model mRNA via single molecule detection.

Our lab @emoryuniversity.bsky.social Dept. of Cell Biology is hiring a research technician! This position is ideal for someone who enjoys research, organization, and working in a team. Come for a few years and publish with us, or stay to build a career. staff-emory.icims.com/jobs/149068/...

26.06.2025 18:29 β€” πŸ‘ 22    πŸ” 19    πŸ’¬ 0    πŸ“Œ 2

Amazing #Evol2025 !

New friends on Bluesky 🌌

Stunning science 🧬

Heartfelt rally calls πŸ“£

Hope in the face of adversity πŸ«‚

But... I will not miss the jingle jangle of those darn badges πŸ”•

24.06.2025 21:28 β€” πŸ‘ 40    πŸ” 3    πŸ’¬ 1    πŸ“Œ 0
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Closing out Evolution #Evol2025 #Evol25 with a bang!

Liam Revell combines phylogenetic comparative biology & viral phylodynamics

New frontiers in phylogenetic comparative methods!

24.06.2025 21:18 β€” πŸ‘ 8    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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Menna Jones @mennajones.bsky.social describes a multi-regime bounded Brownian motion model

This model is assessed in frogs 🐸 to show that there may be shifts in developmental constraints

#Evol2025 #Evol25

24.06.2025 20:25 β€” πŸ‘ 4    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
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Kyle David @kylethedavid.bsky.social discusses two new genome 🧬 duplications 🧬🧬 in the yeast subphylum

With three WGD clades, we can ask what are the causes and consequences of WGD in yeast

@evolutionvu.bsky.social @rokaslab.bsky.social

#Evol2025 #Evol24

24.06.2025 18:52 β€” πŸ‘ 10    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0
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Not accounting for codon evolution?

You may end up with large amounts of false positives in tests for selection!

academic.oup.com/mbe/article/...

#Evol2025 #Evol25

24.06.2025 18:43 β€” πŸ‘ 9    πŸ” 1    πŸ’¬ 0    πŸ“Œ 2
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Hannah Verdonk @hverdonk.bsky.social describes Multiclass Synonymous Substitution (MSS) models

This model helps us avoid the trap of assuming all synonymous substitutions are created equal

The method captures selection on tRNA abundance

#Evol2025 #Evol25

24.06.2025 18:38 β€” πŸ‘ 9    πŸ” 3    πŸ’¬ 1    πŸ“Œ 0
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Russell Dinnage @rdinnager.bsky.social proposes that Evolutionary Constraints present a challenge & opportunity to build better models

GenAI can learn the underlying constraints of evolution w/out proposing impossible states

Work in bird beaks πŸ¦πŸ€πŸ¦†πŸͺΏπŸ¦β€β¬› demonstrates the possibilities!

#Evol2025

24.06.2025 16:23 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Alberto Rivera of the Baxevanis group @baxevanislab.bsky.social presents on the allorecognition in cnidarians πŸͺΈ

There is evidence for synteny and conservation across allorecognition complexes in Cnidaria... How does this compare to bilaterians?

#Evol2025 #Evol25

24.06.2025 16:14 β€” πŸ‘ 8    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0

Read more about the limitations of BFMs due to evolutionary relatedness

arcadia-staging.pubpub.org/pdf/pub/idea...

#Evol2025 #Evol25

24.06.2025 15:59 β€” πŸ‘ 1    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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Ryan York of @arcadiascience.com discusses Biological Foundation Models

These models aim to soak up all biological data and spit out biological understanding

The models, however, are hitting a plateau

More parameters != More information

#Evol2025 #Evol25

24.06.2025 15:52 β€” πŸ‘ 2    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0
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Lei Curtis @leicurtis.bsky.social explores the role of inversions πŸ§¬β†”οΈπŸ§¬ in the Atlantic Cod 🐟

They combine results from multiple methods to identify the most likely inversions give within and between method variation

Small inversions happen! And they are common.

#Evol2025 #Evol25

24.06.2025 15:40 β€” πŸ‘ 6    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
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If interested in #yeast phylogenomics, come to my talk on the Compendium of #Saccharomyces at #Evol2025 today at 2:30pm!

24.06.2025 14:40 β€” πŸ‘ 2    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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James Boyko @jboyko.bsky.social reminds us that comparative methods for trait evolution are highly dependent on model choice

He proposed new ideas for searching and optimizing model choice

#Evol2025 #Evol25

24.06.2025 15:13 β€” πŸ‘ 2    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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Olivia Brooks @olbrooks.bsky.social shares the evolution of autoresistance to toxins in amphibians 🐸

Sodium channels from 39 amphibians revealed some fascinating evidence for gene conversion

#Evol2025 #Evol25

24.06.2025 14:13 β€” πŸ‘ 4    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
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Megan Phillips @meganphillips.bsky.social tells the tale of the little plasmid 🧬 that could 🦠

How does antimicrobial resistance impact the evolution of plasmids

#Evol2025 #Evol25

24.06.2025 13:48 β€” πŸ‘ 5    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0

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