Jonathan Eisen

Jonathan Eisen

@phylogenomics.bsky.social

Professor at UC Davis Work: phylogenomics & microbiomes; wildlife; marine biology; #openscience; Other: #birds; baseball; T1D Lab phylogenomics.me Pics jonathaneisen.smugmug.com Links linktr.ee/jonathaneisen TED go.ted.com/6WPm

32,380 Followers 5,733 Following 2,413 Posts Joined Aug 2023
6 hours ago

Announcing StrainVis! 🦠🧫🧪

www.biorxiv.org/content/10.6...

This nifty web-based tool allows you to visualize your strain level analyses. You can combine ANI and synteny based analyses and it will make all kinds of cool publication ready plots for you - examples follow. By Hagay Enav and Inbal Paz:

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18 hours ago
Photo of a Northern flicker. Standing on a large post.  Facing to the left. Background blurry with some plant material.

Just a little late night bird for everyone.

Northern flicker. In my yard today. #DavisCA #California #BirdPhotography #Birds

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17 hours ago
Crested Caracara landing on a Saguaro. Picture by Mike Henry.

I can easily name five things I love about Northern Flickers. But, I'm a bird nut. Esteemed southern Arizona bird photographer, @onlyveesaz.bsky.social, is taking me to see a Crested Caracara/nest on Sunday. His pic:

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18 hours ago

I was thinking of having my post read "If you do not love Northern flickers, you are not for me ..."

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18 hours ago
Photo of a Northern flicker. Standing on a large post.  Facing to the left. Background blurry with some plant material.

Just a little late night bird for everyone.

Northern flicker. In my yard today. #DavisCA #California #BirdPhotography #Birds

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1 day ago

Why do we have to keep hearing the thoughts of these dipshit grifters? There are actual smart people out there! This isn't one of them!

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1 day ago

If I were looking for a post doc position, I think this would be my #1 to apply to ...

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2 days ago

If you want to join a team making pathogen sequencing and analysis for public health, surveillance, and research more accessible, more equitable and more ✨awesome✨ - look no further - come join us on this mission at ARTIC!

#openscience #opendata #opensource

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1 day ago
Preview
Sam Altman Says Intelligence Will Be a Utility, and He's Just the Man to Collect the Bills

And today in “Well, he is actually even more of a dick than we thought”

gizmodo.com/sam-altman-s...

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2 days ago

It’s because AI bots are trawling the internet constantly. SGD and CGD are constantly being slammed to the point that real people can’t access the site.

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2 days ago

Brutal.

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2 days ago

OK, this one’s pretty dark…

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2 days ago
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Oh FFS - the Cloudflare humanity checks for looking at journal articles are so fucking annoying but they do help me reduce time spent reading articles

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2 days ago

Mountain gorillas have dense black fur for colder elevations of Equitorial mountain climates, a broad chest, & long muscular arms for knuckle-walking & climbing. A silver-grey saddle marks mature “silverbacks” (Canington 2018) #2026MMM

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3 days ago
Preview
Anthropic Sues the Administration Here's why Trump wanted to bring firms to heel with his executive orders. Here's what can happen when he fails.

joycevance.substack.com/p/anthropic-...

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3 days ago

For reference, the DoD cut $15M in pancreatic cancer research funding last year.

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3 days ago

This is so cool:

www.biorxiv.org/content/10.6...

Discovery of a Genetic Toxin-Antidote System in Vertebrates

hat tip to @asaflevylab.bsky.social

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3 days ago

OMG

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4 days ago

Ubercool.
Toxin-antitoxin systems were discovered 40 years ago in E. coli, and later on in many genomes including in euks.
Now the 1st TA system is reported in the mouse genome!
It affects embryo killing. Amazing distribution of a simple yet efficient genetic system
www.biorxiv.org/content/10.6...

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4 days ago

This woman, Ghanimat Azhdari, had just started her PhD at my former department in Ontario. She and 175 other people were killed when their plane was shot down by the IRGC. Her family's still grieving her loss, and now more of them could die in this stupid war.

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4 days ago

There are a lot of scientific illustrators and graphic designers who are building their portfolios and will take on work for less than you might imagine. It's not out of reach.

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4 days ago
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Awaiting talk by @michaelpollan.bsky.social at the Crest Theater in Sacramento - and we had a nice dinner first

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4 days ago
A color outdoor portrait of American bacterial geneticist Evelyn Witkin in her later years, standing in a sun-dappled garden or courtyard setting with green foliage and a brick building in the soft-focus background. She is an elderly woman with fair skin, short wavy white hair, gentle smile lines, and warm, thoughtful eyes gazing directly at the camera with a kind, serene expression. She wears a white button-up blouse with subtle textured patterns, small earrings, and a distinctive beaded necklace featuring dark and light beads. A small silver dragonfly brooch is pinned to the left side of her blouse, symbolizing her pioneering work on DNA damage repair (often likened to cellular "rescue" mechanisms). The natural daylight softly illuminates her face, highlighting her dignified and approachable presence as a trailblazing scientist and a Lasker Award and National Medal of Science recipient. The overall mood is one of quiet wisdom, resilience, and quiet celebration of a long, impactful career in #WomenInScience. #WomensHistoryMonth

Geneticist Evelyn Witkin (b. #OTD 1921) pioneered work on DNA damage repair & mutagenesis.

Her discovery of the SOS response revealed how cells actively respond to genetic threats, laying foundations for insights into cancer, aging, radiation effects & chemotherapy resistance. #WomenInSTEM #WHM

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5 days ago

I cannot stop thinking of all the amazing and wonderful people I have known from Israel, Iran, Lebanon and other countries caught up in this war. It is people just like them who are being killed and harmed here.

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5 days ago

I cannot stop thinking of all the amazing and wonderful people I have known from Israel, Iran, Lebanon and other countries caught up in this war. It is people just like them who are being killed and harmed here.

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5 days ago

He was (and is) so bad. Blocked me (and countless others) for pushing back on him in early COVID days. A stain on UCSF that apparently they want back for some reason 🤷🏻‍♂️

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5 days ago
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A key read regarding some (just some) examples of inappropriate, offensive, and/or inaccurate comments by Vinay Prasad (from May of last year)

An Anti-Science MAHA Extremist Is Playing a Major Role at the FDA

newrepublic.com/article/1949... via @newrepublic

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5 days ago

Maybe it wanted a souveneir

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5 days ago

Well, that is what iNaturalist suggested but large white headed gulls are not my one-te, two-te, three-te or forte ...

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5 days ago
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Today marked the 2nd worst day of my life when today in 2020, my group of 7 dear friends were hit by the impaired driver of a truck who was high on cocaine killing my dear friend instantly while we were riding. We rode to honour the memory of my friend Arthur who was killed. 💝
#biking #cycling

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