NFDI4BIOIMAGE

🌟 #MeetOurDataSteward: #3: Riccardo Massei #DataSteward at NFDI4Bioimage and researcher @ufz.de. He makes high-content screening data FAIR and cloud-ready using #OMERO, #Python, #Galaxy, and #Jupyter. Questions? Get in touch!

👉https://nfdi4bioimage.de/about-us/data-stewardship-team/massei/

At #CoRDI2025 in Aachen (August 26–28), #NFDI4BIOIMAGE will present posters on cloud-based data infrastructure, automation, #FAIR principles, interoperability, and user-friendly analysis environments for the #bioimaging community.

👉 You can find the #CoRDI2025 program here: www.nfdi.de/cordi-2025/

🌟 #MeetOurDataStewards – Highlight Workshop/Publication #2: Jens Wendt

You want to expand your knowledge in the field of bioimage analysis? Gain insights into current and emerging developments in the @globias.bsky.social seminar series.

To the GloBIAS Youtube channel:
👉 www.youtube.com/@GloBIAS

🌟 #MeetOurDataStewards: #2: Jens Wendt
Data steward Jens Wendt shares with us the challenges encountered with an example request he received and how a solution was found and implemented together with the research group.
Have a look at Jens' work as a data steward:
👉 nfdi4bioimage.de/news/news-de...

🎉 A detailed program for #CoRDI2025 is now available and we are happy to announce that @nfdi4bioimage.bsky.social will be represented with various exciting contributions from August 26 to 28 in Aachen.

Take a look and see if you can find us in the program:
👉 www.nfdi.de/cordi-2025/

🌟 #MeetOurDataStewards – Why does #OpenScience matter? #2: Jens Wendt
“With opening your data up to the public and up to your colleagues, you enable synergies that you might not even think about.”, says Jens Wendt. The @nfdi4bioimage.bsky.social data stewards will help you make your data accessible.

🌟 #MeetOurDataSteward: #2: Jens Wendt, #DataSteward at @nfdi4bioimage.bsky.social and the Imaging Network at @uni-muenster.de.
Jens will happily help you with administration and development around #OMERO, Python, image data management and image analysis tools. 🧰

👉 nfdi4bioimage.de/about-us/dat...

Many thanks to the @ebi.embl.org for inviting our @nfdi4bioimage.bsky.social colleagues @sweidtkamp.bsky.social, @tom-bssnnt.bsky.social and @schmchris.bsky.social to give insights into the journey to #FAIR bioimage data.
Find the recording of the webinar here:
💻 www.youtube.com/watch?v=7nj2...

Riccardo Massei (UFZ) presented RDM strategies for zebrafish embryo HCS image and video data in the zebrafish imaging pre-conference workshop of the #HIconference2025.
He also organized the pitch session “Data stewardship in microscopy and bio imaging” to gain insights from the community.

Last week at #HIconference25 @haesleinhuepf.bsky.social (Task Area Leader @nfdi4bioimage.bsky.social) took the opportunity to explain in a keynote talk how we can use LLMs to analyze data in a reproducible and transparent way.
Find his slides publicly available here:
👉 zenodo.org/records/1573...

🌟 #MeetOurDataStewards #1: Ksenia Krooß
New to bioimage data? This workshop offers a practical introduction to @nfdi4bioimage.bsky.social and I3D:bio, common challenges and the OMERO platform. Learn about image analysis tools and how to select data repositories.

👉 zenodo.org/record/13861...

#TiM2023 and #TiM2025 data is now publicly available!
Find the data collected and annotated at the Trends in Microscopy conference in an OMERO-based framework introduced by I3D:bio '23 and extended in '25, supported by the @nfdi4bioimage.bsky.social data stewards.
👉 nfdi4bioimage.de/news/news-de...

🎉 @nfdi4bioimage.bsky.social will be represented at #CoRDI with several posters and talks.
Registration for the event is already open and we would be delighted to discuss our favorite topics with you from August 26 - 28 in Aachen.
Find the program and registration here:
👉 www.nfdi.de/cordi-2025/

🌟 #MeetOurDataStewards: #1: Ksenia Krooß
Before becoming a #DataSteward, Ksenia found the process of publishing data overwhelming—there were so many terms, metadata, and steps! Now she helps others navigate the process, making submissions smoother for everyone.

👉 nfdi4bioimage.de/news/news-de...

Join us on "A journey to FAIR bioimage data" on July 2, and learn how to set up an efficient data flow that is aligned with FAIR principles.

📨 Find out what's new, what's upcoming and what's to read or review in our recent @nfdi4bioimage.bsky.social newsletter.
We have compiled our latest conference contributions, publications and important upcoming events in the field of #BioImaging and #RDM for you.
👉 nfdi4bioimage.de/community-in...

Looking forward to the Helmholtz Imaging Conference in Potsdam, June 25–27! @haesleinhuepf.bsky.social will give a keynote on #LLMs for #bioimage, and Riccardo Massei will contribute a workshop on #zebrafish image and video analysis on June 25.

👉 Register here: events.hifis.net/event/2061/o...

🌟 #MeetOurDataStewards – Why does #DataManagement matter? #1: Ksenia Krooß 🎥

Ksenia Krooß shares: “It keeps research organized, helps your future self and others, and accelerates science.” Don’t treat it as an afterthought— reach out to your local #RDM office or #NFDI initiative for support.

At the meeting of the NFDI communicators at the
@nfdi.de office in Mannheim, Inga Mohr from the
@nfdi4bioimage.bsky.social Coordination Office was able to exchange ideas with other communicators from #NFDI consortia and gain inspiration from various presentations and workshops.

Michele Bortolomeazzi, Christian Schmidt and Jan-Philipp Mallm at @nfdi4bioimage.bsky.social have developed a new OMERO-web plugin: OMERO-vitessce. It enables the visualization of datasets hosted in #OMERO with the #Vitessce multimodal data viewer.
Find the poster here:
👉 zenodo.org/records/1483...

@joshmoore.bsky.social presenting at #ELMI2025 about the #Bioimaging community's immense efforts to pave the way to OME-Zarr 1.0 -
Stable cloud-readiness for bioimage data is getting real.
Slides available in Zenodo:
doi.org/10.5281/zeno...
@gerbi-gmb.de
@nfdi4bioimage.bsky.social

🌟 #MeetOurDataSteward: #1: Ksenia Krooß
#DataSteward at NFDI4Bioimage & Center for Advanced Imaging (CAi) at HHU Düsseldorf! Ksenia can help you with microscopy, #DataManagement, #Metadata (#OMERO), and data submission.

👉 nfdi4bioimage.de/about-us/data-stewardship-team/krooss/

What a special atmosphere! #ELMI2025 Poster Session 1 on Helix A last night. The perfect environment to exchange with friends & colleagues about #bioimaging #RDM:
- OMERO-vitessce
- IO-FAST initiative
- @nfdi4bioimage.bsky.social Data Stewardship
Talks, Workshops & Poster Session 2 up ahead today!🔬

In case you missed the talk "Cloud based image data science" by Josh Moore and Yi Sun as part of the #NFDITalks, we have good news for you:
You can watch the recorded stream on the Youtube channel of @nfdi.de :
👉 www.youtube.com/watch?v=bzfm...

Find the slides here:
👉 zenodo.org/records/1557...

Two weeks ago, experts from the #LTP community gathered for the 4th Workshop on FAIR Data in Plasma Science. Hosted by @inpgreifswald.bsky.social, @ruhr-uni-bochum.de, and Universität Kiel, the event focused on making plasma research data more #FAIR.

👉 More info: www.plasma-mds.org/index.html

#MeetOurDataStewards 👨‍💻

@nfdi4bioimage.bsky.social helps you manage #bioimaging data. Starting next month, we'll feature an expert from our Data Steward team with tips and projects each month.

You can find an overview of our Data Stewards here: nfdi4bioimage.de/about-us/data-stewardship-team/

@nfdi4bioimage.bsky.social Data Steward Riccardo Massei presented an #OMERO framework for the management of image flow cytometry data at the @helmholtzhmc.bsky.social Conference to enable pollen classification. 🌿

More about Riccardo's research: www.researchgate.net/profile/Ricc...

Efficient, standards-based #bioimaging data management is essential for research and reuse. Join the presentation about “A Journey to #FAIR Bioimage Data,” a contribution to
@ebi.embl.org's STANDFLOW project webinar series.

🗓️ July 2, 2025 | 02:30–03:30 pm

👉 Register: www.ebi.ac.uk/training/eve...

@nfdi4bioimage.bsky.social @openmicroscopy.org @zarr.dev #Flamingos ... what's not to love?

How do scientists make sense of complex #ResearchData? 🔬
Scientists in low-temperature #PlasmaPhysics, supported by @nfdi4bioimage.bsky.social, are developing a domain-specific ontology and terminology service to standardize their (meta)data.

👉 Find out more: zenodo.org/records/1438...