NFDI4BIOIMAGE

🌟 #MeetOurDataStewards: #5: Mohsen Ahmadi
Good #ResearchDataManagement is essential for keeping large and multidimensional data sets structured and making them #reusable for future research.
Our @nfdi4bioimage.bsky.social Data Stewards will be happy to help you:
👉 nfdi4bioimage.de/about-us/dat...

@nfdi4bioimage.bsky.social Task Area Leaders Josh Moore and Christian Tischer will introduce participants to the history and basics of OME-Zarr at the international 2025 OME-NGFF Symposium from November 10–11 in Zurich, SW.
Register here:
👉 www.ema.uzh.ch/de/register/...
Picture by BioVisionCenter

🌟 #MeetOurDataStewards #5: Mohsen Ahmadi

He is a a biochemist and works with image microscopy from plasma medicine at @inpgreifswald.bsky.social. If you need help with organizing your microscopy image data, feel free to contact Mohsen.

👉 nfdi4bioimage.de/about-us/dat...

Poster for the panel discussion: The Power of Sharing: Open Data in Bio-image Analysis on October 24, 2025 starting 1:30 pm on site at the KUBUS Hall 1A, UFZ Leipzig or online starting at 2:00 pm. In the lower part of the poster the experts are listed with pictures and names, as well as the moderation.

Save the date for the panel discussion “The Power of Sharing: Open Data in Bioimage Analysis” on October 24, 2025. 🤝
The discussion with experts from various fields related to imaging is organized by Young Microscopists and Image Analysts (YMIA).
Register here:
👉 gerbi-gmb.de/machform/vie...

In addition to his work @scadsai.bsky.social, @haesleinhuepf.bsky.social works @nfdi4bioimage.bsky.social as task area leader.
Here you can listen to Robert's interview in the podcast series “The Microscopists".

👉 themicroscopists.bitesizebio.com/episodes/rob...

🌟 #MeetOurDataStewards – Highlight Workshop/Publication #4: Vanessa Fuchs
Discover I3D:bio's great OMERO training slides, workshop materials and presentations. Valuable resource – not just for us data stewards at @nfdi4bioimage.bsky.social but also for you. Check it out!
gerbi-gmb.de/i3dbio/i3dbi...

🌟 #MeetOurDataStewards – Highlight Training Material #4: Vanessa Fuchs

Discover #i3dbio’s great OMERO training material: general training slides, workshop material for using #OMERO and help to ensure smooth IT & Core Facility collaboration.

👉 Check it out: gerbi-gmb.de/i3dbio/i3dbi...

Having trouble with fragmented data sets?
The workflow „Linking of Research (Meta-)data in OMERO to Foster FAIR Data in #PlasmaScience“ helps to manage images and metadata according to #FAIR principles, combining #Plasma-MDS and #REMBI standards.
Find more information here: doi.org/10.5281/zeno...

Do you know #NFDI?
5 Life Science consortia asked that at the #HHU Core Facility Symposium and introduced services and concepts for RDM.
NFDI4Immuno, NFDI4Health, @nfdi4plants.bsky.social, @nfdi4microbiota.bsky.social & NFDI4BIOIMAGE showed how #FAIRdata connects disciplines.

Our 3rd quarterly @nfdi4bioimage.bsky.social newsletter is out!

Find information on the last months' political and strategic developments, links to important papers, recordings and training material as well as an overview of upcoming events.

To the newsletter:
👉 nfdi4bioimage.de/community-in...

🌟#MeetOurDataStewards: #4: Vanessa Fuchs

In today's blog post, Vanessa tells you about her first steps toward making her data reusable. In the end, the data was accessible, annotated, and reusable and her colleague was able to reanalyze it.

👉 Find out more: nfdi4bioimage.de/news/news-de...

What to do if you have extraordinary size data but no extraordinary local memory? 😱

At the @grcib2025.bsky.social, @joshmoore.bsky.social addressed this issue in the talk “When Data Doesn’t Fit – A Bioimaging Story from Files to FAIR”.

👉 Interested? zenodo.org/records/1708...

🌟 #MeetOurDataStewards #4: Vanessa Fuchs

Vanessa believes that #OpenScience and #DataManagement make it easy to share #Data with others, publish it in repositories, and enable researchers to reuse it. This adds value for the scientific community and ensures the sustainable use of public funding.

✍ If you're having difficulty writing #BioimageAnalysis code that enables others to follow your workflow, have a look at @haesleinhuepf.bsky.socials slides on „Reproducible Bio-Image Analysis using Python, Napari, Jupyter and AI“ from the #EMBOlsm25.
To the slides: 👉 doi.org/10.5281/zeno...

NFDITalk (15 Sep 2025): Datenschutz, Wissenschaft und Forschung – Widerspruch oder Chance? In unseren NFDITalks präsentieren Wissenschaftler:innen und Expert:innen aus verschiedenen Disziplinen spannende Themen rund um die NFDI und Forschungsdaten. In dieser Folge spricht Tino Melzer, Lande...

Im nächsten #NFDITalk geht es um "Datenschutz, Wissenschaft und Forschung – Widerspruch oder Chance?".

🗓️ 15.09., 16 Uhr
🎤 Sprecher: Tino Melzer, Landesdatenschutzbeauftragter für Thüringen

➡️ YouTube: www.youtube.com/live/ovyXGR5...
➡️ Zoom: www.nfdi.de/talks

#FDM #RDM #NFDI #forschungsdaten

🌟#MeetOurDataStewards Community Support #4: Vanessa Fuchs

She works at the Center for Advanced Imaging at @hhu.de and can help with any queries about organizing your data and annotating it with #Metadata in #OMERO.
Feel free to contact her if you need help!

👉 nfdi4bioimage.de/about-us/dat...

Interested in data management in microscopy not only in the light but also in the electron (microscopy) world? Chat with Conni Wetzker at the shared booth (No. 57) of @nfdi4bioimage.bsky.social, @fairmat.bsky.social and MatWerk at the #MC2025 in Karlsruhe.
To our poster: zenodo.org/records/1701...

#CoRDI2025 came to an end as a big success. Shoutout to @nfdi.de & WZL @rwth.bsky.social for a great event. Some of us look ahead to participate in the #Base4NFDI user conference. Others drive home reaffirmed once more in our enthusiasm to embrace FAIR data & tackle challenges for our community.

🌟#MeetOurDataStewards #3: Riccardo Massei
Riccardo's first project as a Data Steward at @nfdi4bioimage.bsky.social involved managing and publishing an HCS zebrafish dataset by using the #VAST Bio-Image platform and #OMERO. 🐟

👉 nfdi4bioimage.de/news/news-de...

Julia Thönnißen from @fz-juelich.de demonstrates how large-scale 3D imaging data from neuroscience research can be handled & analyzed without the need for data duplication. Leveraging #OME-Zarr, the #tiamat tool developed at FZJ enables seamless work at scale. @nfdi4bioimage.bsky.social #CoRDI2025

The #CoRDI2025 is an excellent opportunity for exchange with fellow consortia & many initiatives building research data infrastructure for excellent science. Come find @nfdi4bioimage.bsky.social at the Market of Oppurtunities on the ground floor of C.A.R.L building to learn about our services.

An enlightening opening keynote by Rob Finn from @ebi.embl.org at #CoRDI2025 in Aachen. Among others, he highlighted the rapid growth of data in the field of imaging as well as challenges of data handling and sharing across scales and technologies.
Looking forward to an exciting conference ahead.

Visual of segmented human induced pluripotent stem cells with the key workshop dates: Symposium on November 10-11, Hackathon on November 12-14th in Zurich Switzerland

We're happy to announce the 2025 International OME-NGFF workshop 🎉

📅 Dates:
- Symposium: Nov 10–11, 2025
- Hackathon: Nov 12–14, 2025

📍 Location: Zurich, Switzerland

Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up... 

#bioimaging #openscience #OMENGFF #OMEZarr

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Amazing talk by Björn Grüning from @galaxyproject.bsky.social @uni-freiburg.de & task area leader @nfdi4bioimage.bsky.social on the power of Galaxy. Cloud-deployed workflows as a basis for reuse across domains. An example? Voronoi segmentation in bioimaging, forest imagery & astronomy. #CoRDI2025 👏

Large, complex data require the right environments to handle and process. Dirk v. Suchodoletz and his team create an open source virtual desktop infrastructure fit for bioimage data and more. @nfdi4bioimage.bsky.social @nfdi4plants.bsky.social #CoRDI2025

How to make bioimage analysis workflows #FAIR? Riccardo Massei shows how to use efficient RDM & analysis pipelines in #Galaxy. As a @nfdi4bioimage.bsky.social Data Steward, Riccardo supports the community with expertise in data handling for high-content screening, image analysis & more. #CoRDI2025

Find Robert Wagner on the ground floor level or C.A.R.L at the #CoRDI2025 conference to learn how #OMERO helps with #FAIR data management in the field of low-temperature plasma science. @inpgreifswald.bsky.social @nfdi4bioimage.bsky.social

Poster Session at #CoRDI2025. Here is @joshmoore.bsky.social presenting how cloud-ready next-generation file formats like #OME-Zarr enable federated repositories with large N-dimensional arrays at peta-scale.
#OME-NGFF @nfdi4bioimage.bsky.social
Find the poster on C.A.R.L level 2 @rwth.bsky.social

Today starts the second edition of #CoRDI2025, with numerous keynotes, poster sessions and lectures on #ResearchData Infrastructure @rwth.bsky.social. We look forward to a lively exchange and wish all participants an entertaining and informative time. ✨

👉 www.nfdi.de/cordi-2025/

🌟 #MeetOurDataStewards #3: Riccardo Massei
Riccardo believes that managing data in a #FAIR way is essential to scientists' daily work. If you need assistance with #FAIR data management the @nfdi4bioimage.bsky.social Data Stewards are available to provide guidance.

👉 nfdi4bioimage.de/about-us/dat...