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Binglan Li

@binglan.bsky.social

Computational biologist. ML/AI for biomedical research. Alzheimer's Diseases and knowledge graph. Complex diseases genetics. Pharmacogenomics.

24 Followers  |  38 Following  |  9 Posts  |  Joined: 19.11.2024  |  1.3841

Latest posts by binglan.bsky.social on Bluesky

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Will your study change the world? This AI tool predicts the impact of your research A tool called Funding the Frontier visualizes all the downstream impacts of funding β€” and predicts which studies will have the biggest societal impact.

I have mixed feelings about this work. While it's interesting to visualize the impact of scientific works, metrics like patents and funding don't necessarily reflect social and ethical impacts, like cultural shifts.

www.nature.com/articles/d41...

16.10.2025 19:41 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

A pleasant read on how Deep Learning models can facilitate the prediction of gene expression levels from DNA sequences. This question led me into the field of computational biology almost 15 years ago.

17.09.2025 20:15 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Can't wait to try out the new features of Biomni. I wonder how these will help democratize scientific data for the whole biomedical community.
biomni.stanford.edu/blog/sage-bi...
biomni.stanford.edu/blog/consens...

15.09.2025 18:19 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Why language models hallucinate OpenAI’s new research explains why language models hallucinate. The findings show how improved evaluations can enhance AI reliability, honesty, and safety.

Love how OpenAI's new paper demystifies the origin of LLM hallucination as a result of training and testing. LLMs are rewarded for making confident guesses rather than reporting uncertainty, hence returning guesses (hallucinated responses) in production.

openai.com/index/why-la...

10.09.2025 20:00 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Projects in ChatGPT | OpenAI Help Center Organize, revisit, and continue your workβ€”all in one place

Projects are finally freely available on ChatGPT apps.

help.openai.com/en/articles/...

08.09.2025 18:43 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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TransferTWAS: A transfer learning framework for cross-tissue transcriptome-wide association study TransferTWAS is a TWAS method that adaptively borrows information from multiple external tissues to boost gene-expression prediction in tissues with small sample sizes. It outperforms competing approa...

TransferTWAS: A transfer learning framework for cross-tissue transcriptome-wide association study: The American Journal of Human Genetics www.cell.com/ajhg/fulltex...

04.09.2025 21:25 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Genomics-informed drug-repurposing strategy identifies two therapeutic targets for preventing liver disease associated with metabolic dysfunction We prioritized 57 druggable targets from 212 putative causal genes of metabolic-dysfunction-associated steatotic liver disease (MASLD). Using a drug-repurposing analysis that integrated protein struct...

Genomics-informed drug-repurposing strategy identifies two therapeutic targets for preventing liver disease associated with metabolic dysfunction: The American Journal of Human Genetics www.cell.com/ajhg/fulltex...

04.09.2025 21:20 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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CodeMonkeys: Scaling Test-Time Compute for Software Engineering Scaling test-time compute is a promising axis for improving LLM capabilities. However, test-time compute can be scaled in a variety of ways, and effectively combining different approaches remains an a...

It makes sense that parallel agents can improve performance, much like a team of experts can lead to better results. The study also discusses the relationship between costs and the number of agents.

scalingintelligence.stanford.edu/pubs/codemon...

30.08.2025 00:22 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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What it looks like when an agent gets stuck for no reason.

It was tasked with creating a .gitignore file, following the GitHub template. It ended up reading a phantom .gitignore file.

Any suggestions on how to better prompt the agent? Do I need to break down the task?

29.08.2025 19:27 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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The Paradox of Trust and Transparency in AI An AI is useless if you can't trust itβ€”so how do we get there, and in a way that benefits and protects all parties involved?

My new piece on The Paradox of Trust and Transparency in AI www.extremetech.com/science/the-... #artificialintelligence #trust #transparency

06.03.2025 14:58 β€” πŸ‘ 5    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0

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