Cameron Thrash

ASVNet: Inferring microbes from 16S rRNA amplicon sequencing data www.biorxiv.org/content/10.1... #jcampubs

Ecological distribution, environmental roles and drivers of Actinobacteriota in two Mid-Atlantic estuaries www.biorxiv.org/content/10.1... #jcampubs

Microbial metabolism of complex organic matter across diverse deep-sea ecosystems www.biorxiv.org/content/10.1... #jcampubs

Isolation of the first cultured representative from a deep-branching phylum in serpentinite-hosted ecosystems www.biorxiv.org/content/10.1... #jcampubs

Aerobic methane production in marine ecosystems aslopubs.onlinelibrary.wiley.com/doi/10.1002/... #jcampubs 🌊

Models and co-culture experiments assess four mechanisms of phytoplankton–bacteria interactions - Nature Microbiology Mathematical representations of overflow metabolism, mixotrophy, exoenzymes and reactive oxygen species detoxification recapitulate dynamics in co-cultures of Prochlorococcus and eight heterotrophic b...

Models and co-culture experiments assess four mechanisms of phytoplankton–bacteria interactions www.nature.com/articles/s41... #jcampubs

Distribution of methane-cycling archaea in buried ridge flank sediment: community zonation, activity, and potential environmental drivers www.frontiersin.org/journals/mic... #jcampubs

Vertically Resolved Plankton Metabolism From Autonomous Measurements in the Oligotrophic Ocean agupubs.onlinelibrary.wiley.com/doi/10.1029/... #jcampubs 🌊

Carbon metabolic versatility underpins Bathyarchaeia ecological significance across the global deep subsurface Abstract. Bathyarchaeia, among the most ancient and abundant microbial lineages on Earth, dominate diverse anoxic subsurface ecosystems and play a pivotal

Carbon metabolic versatility underpins Bathyarchaeia ecological significance across the global deep subsurface academic.oup.com/ismej/advanc... #jcampubs

Light-driven diel oscillations in microbial metabolism underpin estuarine biogeochemical resilience academic.oup.com/ismecommun/a... #jcampubs

Calculating fast differential genome coverages among metagenomic sources using micov - Communications Biology micov computes coverage breadth across genomes and samples. Its application in metagenomics highlights strain heterogeneity, uncovers associations linking genetic elements to phenotypic traits, and ai...

Calculating fast differential genome coverages among metagenomic sources using micov www.nature.com/articles/s42... #jcampubs

An archaeal genetic code with all TAG codons as pyrrolysine Multiple genetic codes developed during the evolution of eukaryotes and bacteria, yet no alternative genetic code is known for archaea. We used proteomics to confirm our prediction that certain archae...

An archaeal genetic code with all TAG codons as pyrrolysine www.science.org/doi/abs/10.1... #jcampubs

Updated taxonomy of the family Rhizobiaceae with proposals for 10 novel genera and 35 novel combinations www.biorxiv.org/content/10.1... #jcampubs

Rubisco is slow across the tree of life | PNAS Rubisco is the main gateway through which inorganic carbon enters the biosphere, catalyzing the vast majority of carbon fixation on Earth. This piv...

Rubisco is slow across the tree of life www.pnas.org/doi/abs/10.1... #jcampubs

Organic geochemical evidence for life in Archean rocks identified by pyrolysis–GC–MS and supervised machine learning www.pnas.org/doi/abs/10.1... #jcampubs

Controls and contributions of methylotrophic methanogenesis to methane production in coastal sediments aslopubs.onlinelibrary.wiley.com/doi/10.1002/... #jcampubs

Beyond Methane Oxidation: The Protein Landscape of ANME‐2a Reveals an Integrated System for Diazotrophy and Membrane Fortification enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/... #jcampubs

Genome integrity relies on rapid recycling of DNA Pol III in bacteria www.pnas.org/doi/abs/10.1... #jcampubs

Safeguarding microbial biodiversity: microbial conservation specialist group within the species survival commission of the International Union for Conservation of Nature journals.asm.org/doi/full/10.... #jcampubs

A Global Discovery of Antimicrobial Peptides in Deep-Sea Microbiomes Driven by an ESM-2 and Transformer-based Dual-Engine Framework www.biorxiv.org/content/10.1... #jcampubs

Eutrophication Reshapes Microbial Communities and Life‐History Strategies in the Riverine Ecosystems enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/...

Microbial aerotrophy enables continuous primary production in diverse cave ecosystems - Nature Communications Metabolic strategies of cave microorganisms are poorly studied. Here, the authors show that cave microbes use atmospheric trace gases hydrogen, carbon monoxide and methane as energy and carbon sources...

Microbial aerotrophy enables continuous primary production in diverse cave ecosystems www.nature.com/articles/s41... #jcampubs

Decadal scale phytoplankton species miniaturization in subtropical coastal waters academic.oup.com/ismej/advanc... #jcampubs

Respiratory quotients of particle-associated microbes track carbon flux attenuation in the mesopelagic Southern Ocean academic.oup.com/ismej/advanc... #jcampubs 🌊

Ecological Diversification of Flavobacteria: Linking Habitat Transitions to Proterozoic Supercontinent Cycles academic.oup.com/ismecommun/a... #jcampubs

Nitrogen concentration shapes the size structure and the functional diversity of phytoplankton communities in the southern Indian Ocean academic.oup.com/ismecommun/a... #jcampubs 🌊

Nutrient availability affects optimal growth strategy in predatory DPANN journals.asm.org/doi/full/10.... #jcampubs

Real-time simultaneous monitoring of multiple analytes in bacterial cultures journals.asm.org/doi/full/10.... #jcampubs

Acidic vacuole-containing organisms are a majority of the eukaryotic microbial community in oligotrophic Argo Basin waters (eastern Indian Ocean) www.sciencedirect.com/science/arti... #jcampubs 🌊

13CFLUX — Third-generation high-performance engine for isotopically (non)stationary 13C metabolic flux analysis academic.oup.com/bioinformati... #jcampubs