Pierre Padilla-Huamantinco's Avatar

Pierre Padilla-Huamantinco

@biodotpe.bsky.social

๐Ÿ‡ต๐Ÿ‡ช PhD Candidate in IIBM UC | Associate researcher at Innovalab | #OpenHardware and #Microfluidics for studying #Microbiomes ORCID: https://orcid.org/0000-0003-4321-1337

175 Followers  |  140 Following  |  4 Posts  |  Joined: 17.11.2024  |  1.816

Latest posts by biodotpe.bsky.social on Bluesky

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The value of diagnostic imaging for enhancing primary care in low- and middle-income countries Medical imaging is a critical diagnostic modality with diverse applications. Many countries are already using AI-assisted chest x-rays (CXR) for tuberculosis (TB) screening. Point-of-care ultrasound (...

We need easier access to imaging at the primary care level

See our paper on why!

www.thelancet.com/journals/ecl...

23.05.2025 20:17 โ€” ๐Ÿ‘ 17    ๐Ÿ” 10    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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This looks awesome! A new open source optical design software! ๐Ÿ˜ฑ

Has anyone used it? Is it good? ๐Ÿ˜

optiland.readthedocs.io/en/latest/in...

03.05.2025 00:17 โ€” ๐Ÿ‘ 22    ๐Ÿ” 4    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 1
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It often takes more than just technical validation to propel #microscopy technology to the end users. Here we detail the comprehensive stewardship model of the AIC (@aicjanelia.bsky.social) in "De-risking transformative microscopy technologies for broad adoption" tinyurl.com/4yat36ce ๐Ÿงช "

27.02.2025 13:17 โ€” ๐Ÿ‘ 21    ๐Ÿ” 7    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

It has been brought to my attention that my article has been censored to exclude certain terms:

asm.org/Articles/202...

web.archive.org/web/20250114...

#MicroSky

04.02.2025 15:59 โ€” ๐Ÿ‘ 640    ๐Ÿ” 389    ๐Ÿ’ฌ 43    ๐Ÿ“Œ 51
Open Source HealthWare Community Meetings โ€“ OSHWA

Check out our link and help us shape the future of Open Source Healthware!

www.oshwa.org/2025/01/30/o...

30.01.2025 22:06 โ€” ๐Ÿ‘ 3    ๐Ÿ” 4    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
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Ten simple rules for developing good reading habits during graduate school and beyond

journals.plos.org/ploscompbiol...

26.01.2025 09:41 โ€” ๐Ÿ‘ 166    ๐Ÿ” 71    ๐Ÿ’ฌ 3    ๐Ÿ“Œ 11
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ๆˆ‘ๅˆถไฝœไบ†ไธ€ไธช็ฒพๅบฆ0.0001ๆฏซ็ฑณ็š„OpenMV็”ตๅŠจๆ˜พๅพฎ้•œ๏ผใ€ๆ˜Ÿ็žณ็ง‘ๆŠ€OpenMV่ง†้ข‘ๆ•™็จ‹ใ€‘_ๅ“”ๅ“ฉๅ“”ๅ“ฉ_bilibili OpenMV+็”ตๅŠจๆ˜พๅพฎ้•œ ๅˆฐๅบ•ๅฏไปฅๆœ‰ๅคš็ฅžๅฅ‡๐Ÿ”๐Ÿ”ฌ ไธ€่ตทๆŽข็ดขๅพฎ่ง‚ไธ–็•Œ๏ผDIYไฝ ็š„ไธ“ๅฑž็”ตๅŠจๆ˜พๅพฎ้•œ๏ผ่ฟ™ๆ˜ฏไธ€ๆฌพๅŸบไบŽ OpenMV ็š„็”ตๅŠจๆ˜พๅพฎ้•œ๏ผŒ็งปๅŠจ็ฒพๅบฆ้ซ˜่พพ 0.0001ๆฏซ็ฑณ๏ผไธปไฝ“็”ฑ3Dๆ‰“ๅฐๅฎŒๆˆ๏ผŒ็ฎ€ๅ•ๆ˜“ๅš๏ผŒ้šๆ—ถไธŠๆ‰‹๏ผ๐Ÿ“‚โœจ ๆ ธๅฟƒๅŠŸ่ƒฝ๏ผš้ซ˜็ฒพๅบฆๆ˜พๅพฎ้•œ็งปๅŠจ็ณป็ปŸ๏ผŒๆ”ฏๆŒๅพฎ็ฑณ็บงๅˆซ่ฐƒๆ•ดDIY็”ตๅŠจๆŽงๅˆถ๏ผŒ่ฝปๆพ่š็„ฆๅพฎ่ง‚ไธ–็•ŒOpenMV็”ตๅญ็›ฎ้•œๅ›พๅƒ่ฏ†ๅˆซ๏ผŒ่ฎฉ็ป†่Œใ€็ป†่ƒžไธ€่งˆๆ— ้—LCDๆ˜พ็คบๅฑ๏ผŒ่ฎฉไฝ โ€œๆ˜พๅพฎโ€็”Ÿๆดปๆ›ดๆธ…ๆ™ฐ๏ผ๐Ÿ“ท ็ป†่ƒžใ€็ป†, ่ง†้ข‘...

This video looks so cool:
www.bilibili.com/video/BV1mf6...

They have modified an OpenFlexure to use an OpenMV camera, and to add motion control buttons and a little screen.

There is a whole video tutorial, it's a shame I don't speak Chinese :(

#OpenHardware

CC @openflexure.bsky.social

22.01.2025 16:30 โ€” ๐Ÿ‘ 1    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 2
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Pursuing beauty: How basic science helps us understand the world Enjoy the videos and music you love, upload original content, and share it all with friends, family, and the world on YouTube.

Christmas stars floating in the ocean. Beauty of the living world drives incredible discoveries; only if we care to look and care for this planet.

Merry Christmas everyone!

stan.md/3VvYGHK

26.12.2024 02:00 โ€” ๐Ÿ‘ 25    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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DIYNAFLUOR: An Affordable DIY Plug-and-Play Nucleic Acid Fluorometer for eDNA Quantification in Resource Limited Settings Nucleic Acid (NA) fluorometry is widely employed for quantifying environmental DNA (eDNA) samples and their downstream DNA sequencing libraries, owing to its sensitivity, accuracy, and speed. However,...

A Preprint for our ~$40 USD, open source, 3D printed DNA Fluorometer, the #DIYNAFLUOR, has just been posted to bioRxiv outlining its performance and applications for #eDNA analysis!๐Ÿฆ•๐Ÿงช๐Ÿงฌ

A big thanks to all the co-authors!

Preprint
www.biorxiv.org/content/10.1...

Git
tinyurl.com/yfh33dsx

#science

17.12.2024 07:04 โ€” ๐Ÿ‘ 49    ๐Ÿ” 21    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 4
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Iโ€™m thrilled to announce that I will be participating as a trainer on behalf of Wenzel Lab in the upcoming workshop โ€œMicrobial Metagenomics: 360ยฐ Approachโ€! ๐Ÿงฌ๐Ÿ”ฌ

If you are interested in metagenomics, make sure to apply: www.embl.org/about/info/c...

#EMBLEvents #EMBO #openhardware #microfluidics

15.12.2024 00:20 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Scientists in Latin America struggle to get key chemicals and other reagents for experiments. A group has begun to help Several leaders of a multinational effort expanding access to essential lab materials discuss its impact and a major funding boost

Getting reagents is a nightmare for scientists in Latin America. But now, a groupโ€”Recloneโ€”has begun to help. I spoke with Reclone leaders for a new Q&A in @science.org www.science.org/content/arti...

12.12.2024 22:42 โ€” ๐Ÿ‘ 33    ๐Ÿ” 7    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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Latin American journals are open-access pioneers. Now, they need an audience SciElo, other platforms work to help journals reach readers around the world

Latin America is a leader in nonprofit open-access, with pioneering platforms like Scielo and Redalyc. But it still struggles to have their journals valued at home, as researchersโ€™ perfomances often depend on them publishing on mainstream commercial journals.

www.science.org/content/arti...

06.12.2024 12:56 โ€” ๐Ÿ‘ 42    ๐Ÿ” 11    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 3
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Artificial intelligence-based chatbot created for bioimage analysis | UC3M Content shared from the official website of the Carlos III University of Madrid - www.uc3m.es

Have you met BioImage.IO Chatbot yet?
๐Ÿ“ฐ Read articles in the press:
@uc3m.es: www.uc3m.es/ss/Satellite...
EurekAlert!: www.eurekalert.org/news-release...
AlphaGalileo: www.alphagalileo.org/es-es/Item-D...
๐ŸŽฅ Check out this interview with C.Fuster & @arratemunoz.bsky.social:
youtu.be/k-LFfXh-emE?...

10.12.2024 13:58 โ€” ๐Ÿ‘ 11    ๐Ÿ” 6    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Hey #HiSciSky ๐Ÿ‘‹.

I'm a post-doc researcher with a background in scientific device dev.

I have just released an open-source STEM-Education project for a $40, 3D-printed, DNA fluorometer with ng/uL levels of sensitivity. Follow for updates!

GitHub Repo: github.com/traulab/DIYN...

#DIYNAFLUOR #STEM

08.12.2024 06:13 โ€” ๐Ÿ‘ 75    ๐Ÿ” 24    ๐Ÿ’ฌ 6    ๐Ÿ“Œ 3

Hivemind! Some random questions for which I would appreciate links/pointers/study cases and books:

1-any examples of large corp/cooperatives/groups that rely on #opensoftware for things like #cloud services, #email, instant messaging and video conferences? 1/2

05.12.2024 20:22 โ€” ๐Ÿ‘ 0    ๐Ÿ” 1    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
2025 Physics and Chemistry of Microfluidics Conference GRC The 2025 Gordon Research Conference on Physics and Chemistry of Microfluidics will be held in Lucca (Barga), Lucca Italy. Apply today to reserve your spot.

Excited to co-chair the @GordonConf on #microfluidics this June in Italy with @TheElviraLab & GRS co-chairs @MiguelAXavier & @AmandaJHaack. We have an amazing list of speakers like Shannon Stott & more - check it out & apply!
www.grc.org/physics-and-...
tinyurl.com/jpy5ed6e

02.12.2024 18:49 โ€” ๐Ÿ‘ 13    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
Segment Anything for Microscopy
YouTube video by I2K Conference Segment Anything for Microscopy

You can now watch the I2K video tutorial on #micro-sam by @anwaiarchit.bsky.social on YouTube: www.youtube.com/watch?v=dxjU... Check it out for an in-depth explanation for how to use our tool to segment your microscopy images.

30.11.2024 17:14 โ€” ๐Ÿ‘ 60    ๐Ÿ” 20    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 3
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As an end-user, I confirm these features.

More info: Velders, A.H., Schoen, C. & Saggiomo, V. Loop-mediated isothermal amplification (LAMP) shield for Arduino DNA detection. BMC Res Notes 11, 93 (2018). doi.org/10.1186/s131...

26.11.2024 02:22 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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While I was looking for heater designs, I found @vsaggiomo.bsky.social article about a K.I.S.S. instrument for LAMP analysis. Once you have the components, it takes less than a hour to reproduce the design.

#openscience #openhardware

26.11.2024 02:22 โ€” ๐Ÿ‘ 3    ๐Ÿ” 1    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 0
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The Broken Lens: Antimicrobial Resistance in Humanitarian Settings MSF report on treating AMR in people caught in challenging humanitarian settings

Our recent report on #AntimicrobialResistance & the need for improved surveillance, testing, infection control, #antibiotic stewardship, funding & global commitments for #AMR solutions in humanitarian settings. #WAAW2024 #MedSky

msfaccess.org/broken-lens-...

20.11.2024 14:35 โ€” ๐Ÿ‘ 10227    ๐Ÿ” 765    ๐Ÿ’ฌ 76    ๐Ÿ“Œ 20
Welcome to OpenFlexure
YouTube video by OpenFlexure Welcome to OpenFlexure

Have you ever wondered what an OpenFlexure Microscope really is? How to build one? And what it is used for?

Look no further! Welcome to OpenFlexure:
www.youtube.com/watch?v=InmL...

21.11.2024 09:09 โ€” ๐Ÿ‘ 5    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Hello world, my name is Robert and I'm a Senior Researcher and the Training Coordinator at scads.ai
I work in #BioImage #DataScience + as I love #openscience you can download this notebook and this text-embedding and explore my training materials yourself.
๐Ÿ”ฌ๐Ÿ–ฅ๏ธ๐Ÿ”“
github.com/haesleinhuep...

19.11.2024 16:24 โ€” ๐Ÿ‘ 60    ๐Ÿ” 13    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
A map of all locations the OpenFlexure Microscope has been built or used in. 58 countries/territories on all seven continents are highlighted in pink.

A map of all locations the OpenFlexure Microscope has been built or used in. 58 countries/territories on all seven continents are highlighted in pink.

Hello BlueSky.

The OpenFlexure Project is an open source project that allows anyone to build a robotic microscope anywhere in the world.

So far people have told us that they have built or used an OpenFlexure Microscope in 50+ countries. Have you built or used one in a country that isn't pink yet?

19.11.2024 16:35 โ€” ๐Ÿ‘ 7    ๐Ÿ” 6    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 0

go.bsky.app/AwPiQdH

15.11.2024 14:14 โ€” ๐Ÿ‘ 13    ๐Ÿ” 6    ๐Ÿ’ฌ 4    ๐Ÿ“Œ 0

Here ๐Ÿ™‹๐Ÿฝโ€โ™‚๏ธ a graduate researcher working with droplet microfluidics and developing open-source hardware instrumentation. Thanks for the list!

18.11.2024 02:03 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

@biodotpe is following 20 prominent accounts