Genetics ML Papers

MOKA: a pipeline for multiomics bridged SNP-set kernel association test https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf296/8384368

A machine learning classifier to identify and prioritise genes associated with murine cardiac development https://journals.plos.org/plosgenetics/article

Octopamine signaling from clock neurons plays dual roles in Drosophila long-term memory https://journals.plos.org/plosgenetics/article

Identifying severe COVID-19 risk variants modulating enhancer reporter activity in lung cells

https://www.biorxiv.org/content/10.64898/2026.02.26.708234v1

Deep learning framework ChIANet predicts protein-mediated chromatin architecture across functional contexts

https://www.biorxiv.org/content/10.64898/2026.02.24.707640v1

AbiOmics: An End-to-End Pipeline to Train Machine Learning Models for Discrimination of Plant Abiotic Stresses Using Transcriptomic Profiling Data

https://www.biorxiv.org/content/10.64898/2026.02.25.707868v1

Achieving spatial multi-omics integration from unaligned serial sections with DIME

https://www.biorxiv.org/content/10.64898/2026.02.25.707961v1

Evaluating Limits of Machine Learning-Assisted Raman Spectroscopy in Classification of Biological Samples

https://www.biorxiv.org/content/10.64898/2026.02.26.708284v1

MOKA: a pipeline for multiomics bridged SNP-set kernel association test https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf296/8384368

A machine learning classifier to identify and prioritise genes associated with murine cardiac development https://journals.plos.org/plosgenetics/article

Octopamine signaling from clock neurons plays dual roles in Drosophila long-term memory https://journals.plos.org/plosgenetics/article

Exploring RNA conformational ensembles in silico: progress and challenges

https://www.biorxiv.org/content/10.64898/2026.02.18.706514v1

Pan-cell-type prediction of splicing patterns from sequence and splicing factor expression

https://www.biorxiv.org/content/10.64898/2026.02.18.706660v1

Reconstructing multi-scale tissue spatial architecture from single-cell RNA-seq with REMAP

https://www.biorxiv.org/content/10.64898/2026.02.21.707167v1

SHAP-Guided CpG Selection with Ensemble Learning for Epigenetic Age Prediction

https://www.biorxiv.org/content/10.64898/2026.02.20.707142v1

Phylogenetic estimation of diversity-dependent biogeographic rates using deep learning

https://www.biorxiv.org/content/10.64898/2026.02.17.706216v1

Summary statistics and approximate bayesian computation are comparable to convolutional neural networks for inferring times to fixation

https://www.biorxiv.org/content/10.64898/2026.02.17.706432v1

Deep models of protein evolution in time generate realistic evolutionary trajectories and functional proteins

https://www.biorxiv.org/content/10.64898/2026.02.19.706898v1

Geometric-aware and interpretable deep learning for single-cell batch correction via explicit disentanglement and optimal transport

https://www.biorxiv.org/content/10.64898/2026.02.17.706490v1

A New Sparse Bayesian Quantile Neural Network-based Approach and Its Application to Discover Physiological Sweet Spots in the Canadian Longitudinal Study on Aging

https://www.biorxiv.org/content/10.64898/2026.02.19.706407v1

Fast and alignment-free flavivirus classification from low-coverage genomes

https://www.biorxiv.org/content/10.64898/2026.02.20.706982v1

How to gain valuable insight from scarce data with Machine Learning: a post-hoc explanation tool to identify biases in biological images classification

https://www.biorxiv.org/content/10.64898/2026.02.20.706981v1

Genomic-island cassette architecture drives pathogenic Enterococcus cecorum lineages: Cassette2Vec-EC, a structural genomics and machine-learning framework

https://www.biorxiv.org/content/10.64898/2026.02.21.707173v1

MOKA: a pipeline for multiomics bridged SNP-set kernel association test https://academic.oup.com/g3journal/article/doi/10.1093/g3journal/jkaf296/8384368

A machine learning classifier to identify and prioritise genes associated with murine cardiac development https://journals.plos.org/plosgenetics/article

Leveraging Foundation Models for the Characterisation of Small RNA Properties

https://www.biorxiv.org/content/10.64898/2026.02.08.704350v1

Genetic variation shapes human mRNA translation and disease risk

https://www.biorxiv.org/content/10.64898/2026.02.10.705206v1

CASTLE: Cell-type Aware SpaTial domain detection via contrastive Learning Embedding

https://www.biorxiv.org/content/10.64898/2026.02.12.705478v1

Machine learning-guided design of artificial microRNAs for targeted gene silencing

https://www.biorxiv.org/content/10.64898/2026.02.12.705546v1

MassID provides near complete annotation of metabolomics data with identification probabilities

https://www.biorxiv.org/content/10.64898/2026.02.11.704864v1