Friday night lights
19.07.2025 06:12 β π 0 π 0 π¬ 0 π 0@zacswider.bsky.social
Biologist turned programmer. Working on data pipelines for high throughput imaging. Mostly posting about Python and Rust but no guantees :)
Friday night lights
19.07.2025 06:12 β π 0 π 0 π¬ 0 π 0Thanks!
05.06.2025 18:24 β π 0 π 0 π¬ 0 π 0mergechannels 0.5.0 adds support for passing colormap objects from cmap (github.com/pyapp-kit/cmap) or matplotlib in addition to built-in colormaps from FIJI, myself, @christlet.bsky.social and @jamesdmanton.bsky.social
pip install mergechannels or build from github.com/zacswider/me...
I donβt recommend it, Iβm falling back to a macro because whatever FIJI is doing can handle the *several* different formats masquerading under the same file extension
05.06.2025 03:51 β π 1 π 0 π¬ 2 π 0Had a convo with someone yesterday who dismissed Python as βnot a real languageβ and βa scripting languageβ.
Python is everywhere β the web, machine learning, analytics, devops, embedded systems, mobile, etc.
Any ideas @psobolewskiphd.bsky.social ? this was partially motivated by one of your napari plugins
04.06.2025 19:39 β π 0 π 0 π¬ 1 π 0There has to be a better way to open .lut files right??
04.06.2025 19:39 β π 0 π 0 π¬ 1 π 0Effortless
30.05.2025 04:09 β π 0 π 0 π¬ 0 π 0I love Dask
29.05.2025 21:05 β π 0 π 0 π¬ 0 π 1github.com/zacswider/me...
20.05.2025 18:45 β π 1 π 1 π¬ 0 π 0Just pushed v0.3.0 which builds in the lovely suite of LUTs created by @jamesdmanton.bsky.social also installable directly into FIJI at sites.imagej.net/JDM_LUTs/luts/
19.05.2025 05:18 β π 4 π 1 π¬ 0 π 1Many such cases
19.05.2025 02:48 β π 1 π 0 π¬ 0 π 0Also adjust low/high points while color mapping π
18.05.2025 20:58 β π 3 π 0 π¬ 0 π 0Building soon - adding support for 3D and u16 images to github.com/zacswider/me...
18.05.2025 05:45 β π 2 π 0 π¬ 0 π 1Mouse just died, time to see how good I can vim.
16.05.2025 19:59 β π 0 π 0 π¬ 0 π 0Measles doesnβt seem that fun to get tbh
25.04.2025 21:31 β π 1 π 0 π¬ 0 π 0Someday when I lead my own engineering team, the style guide will state that JSON must be pronounced with a French accent.
24.04.2025 16:41 β π 1 π 0 π¬ 0 π 0If youβre like me and want to use/blend FIJI lookup tables from Python you can now install mergechannels with pip or build from source: github.com/zacswider/me...
This is a very *minimal* working implementation but thereβs more to come :)
Looks interesting, have you tried it?
13.04.2025 15:34 β π 0 π 0 π¬ 1 π 0π
11.04.2025 21:13 β π 0 π 0 π¬ 0 π 0Wow this is super cool thanks for sharing!
11.04.2025 16:55 β π 1 π 0 π¬ 0 π 0Amaziiiiiing I love matplotlib π₯°
11.04.2025 16:55 β π 3 π 0 π¬ 0 π 0Probably! Anything ready for use?
11.04.2025 14:22 β π 0 π 0 π¬ 1 π 0Wow blending brightfield and fluorescence is always such a pain
11.04.2025 02:50 β π 0 π 0 π¬ 1 π 0Oh yep been there π
10.04.2025 17:07 β π 0 π 0 π¬ 0 π 0What did they do this time
10.04.2025 16:17 β π 0 π 0 π¬ 1 π 0Reason #42 to use a split keeb - multiplexing side projects
10.04.2025 04:09 β π 0 π 0 π¬ 0 π 0Itβs still a little half baked, but hopefully very soon
10.04.2025 02:45 β π 2 π 0 π¬ 0 π 0Added next gen color flavors from @christlet.bsky.social and native blending for inverted cmaps github.com/cleterrier/C...
10.04.2025 01:22 β π 12 π 1 π¬ 1 π 0:(
07.04.2025 22:26 β π 0 π 0 π¬ 0 π 0