Dr. Jaimi Gray

3D rendering of a whole body CT scan of a chimpanzee, showing the skeleton with a density map where yellow = most dense material, blue = medium density material, purple = low density material. Top shows 3 images of the whole body rendered in a series rotating from front to back. Bottom shows a close up of the head and shoulders. The "oVert" symbol is in the top right corner. In the bottom left corner it reads "Pan troglodytes; YPM:VZ:015959; MorphoSource ID: 0000058004"

"What makes us human, I think, is an ability to ask questions, a consequence of our sophisticated spoken language" - J. Goodall.

This #oVertTCN chimpanzee CT scan is available for exploration on MorphoSource: www.morphosource.org/concern/medi...

3D rendering of a CT scan of Brachycephalus nanicus, with the skeleton rendered in light brown and skin rendered in transparent purple. Top = dorsal view, bottom = ventral view. In the bottom right corner there is an image of the frog (a small brown frog) sitting on a coin.

3D renderings of the skeleton of Brachycephalus nanicus, rendered in light brown. Top left = whole skeleton in dorsal (left) and ventral (right) views. Top right = skull in dorsal (left), ventral (middle), and right lateral (right) views. Bottom from left to right, 3D renderings of the hand, foot, spinal column, and should girdle (top) / pelvic girdle (right lateral).

Meet the newest species of Brazilian flea-toad 🐸 Brachycephalus nanicus! 🐸

B. nanicus is <1cm long & dwells under the leaf litter in the cloud forests of Serro do Mar, southeastern Brazil

I CT scanned this specimen for the osteological description

Out today in Zootaxa: mapress.com/zt/article/v...

Hey folks out there who ❤️ to #CTscan things and ❤️ museums! the @amnh.org is hiring a Laboratory Manager for their Microscopy and Imaging Facility, a.k.a. the CT lab 🧪

careers.amnh.org/postings/4550

Two sleepy lizards side by side, photographed on the side of a rural road in South Australia.

A sleepy lizard standing peacefully in the sun, facing the camera

A sleepy lizard facing the camera with it's mouth open and tongue out.

They are also called shingleback/bobtail/two-headed skink/pinecone lizard/stumpy lizard, and more. They're heavily armoured, with a peaceful demeanor (but can be a sassy when bothered). They tend to pair up & stay with the same mate year after year, & you can often find pairs hanging out together ❤️

A 3D rendering of a CT scan of Tiliqua rugosa, facing the front (top) and facing the back (bottom), rendered in yellow (most dense parts), pink (medium density parts), and blue (least dense parts).

A 3D rendering of a CT scan of the head Tiliqua rugosa, in dorsal view (top) and ventral view (bottom), rendered in yellow (most dense parts), pink (medium density parts), and blue (least dense parts).

Hey it's #WorldLizardDay 🦎
Here's one of my faves & one I saw *a lot* of growing up in rural Australia. Tiliqua rugosa has many common names, but where I'm from we call them "sleepy lizard" or "stumpy tail".

Download the #oVertTCN CT scan from MorphoSource here: www.morphosource.org/concern/medi...

I got my hands on this @floridamuseum.bsky.social specimen freshly fixed in 2021, & created skeletal & soft tissue CT scans. You can download them here (including colored skull model): www.morphosource.org/concern/biological_specimens/000408235

View the exploding skull model here: skfb.ly/pzUFC

Image of a 3D model of a veiled chameleon skull, with bones colored to demonstrate skull anatomy, on a black background. Model is shown in lateral (top), antero-lateral (middle), and anterior (bottom) views. A small image of the whole museum specimen is shown with a scale bar in the bottom right corner.

Climbing into my #ColorsOfSkullAnatomy collection: a veiled chameleon (Chamaeleo calyptratus) 🦎 this large male was getting up there in age when he was collected, as shown by his worn down teeth and bone pathologies.

Find the model here:
www.graysvertebrateanatomy.com/veiled-chame...

top left - front page of the PDF of the paper entitled " Establishment of Aquatic Rio Cauca Caecilians, Typhlonectes natans (Fischer 1880) (Gymnophiona: Typhlonectidae), in Florida, with Notes of their Relative Abundance, Distribution, and Natural History. Top right - a 3D rendering of a CT scan of a caecilian, with bone colored skeleton and transparent body, with fish bones inside (rendered in blue) and radiodense digested food (rendered in yellow). Bottom - photograph of a live Rio Cauca Caecilian.

It appears that these aquatic caecilians are doing pretty well down there and definitely reproducing in Miami, with a whopping 115 individuals collected using cans of chicken vienna sausages 🌭

A 3d rendering of a CT scan of two Rio Cauca caecilian with transparent body and bone colored skeleton, showing baby caecilians inside, each rendered in a different color. There are three baby caecilians in the top individual, rendered in green, pink, and purple, and one baby caecilian (rendered in blue) plus one unidentified object (rendered in yellow) in the second individual.

I had so much fun being part of this project! On my scheduled scanning days @ UF Coleman would hand me a bucket of caecilians collected from the Tamiami canal. I put each under the X ray beam to look for babies or interesting food items. If I saw anything of interest, I CT scanned them.

A 3d rendering of a CT scan of a Rio Cauca caecilian with transparent body and bone colored skeleton, showing 7 baby caecilians inside, each rendered in a different color - counter-clockwise from tail to head - red, orange, yellow, green, light blue, dark blue, purple.

Say hello to Florida's newest established species, Typhlonectes natans - the Rio Cauca Caecilian! You can read about their relative abundance, distribution, & natural history, in our brand new paper:

journals.ku.edu/reptilesanda...

Here is one individual I CT scanned that had 7 babies inside!

3D rendering of a diceCT scan of a coiled green tree python, rendered in bright green. Slightly overlapping is a 3D rendering of the python's skeleton, rendered in a light brown color.

It's #WorldSnakeDay so here is a green tree python I CT scanned for #oVertTCN 🐍

Get the datasets (both #diceCT and regular CT) on MorphoSource: www.morphosource.org/concern/biol...

💚💚💚

Now Jaimi Gray is up! "The Diffusion Diaries: Using diffusible iodine-bases contrast-enhanced Computed Tomography for High-throughout imaging of 3D anatomy of natural history specimens" #JMIH25 #ASIHin3D

Display slide that reads "Joint meeting of Ichthyologists and Herpetologists Saturday July 12, 2025 / 10.30am - 10.45 Session with big attendance '28.1 | the Diffusion Diaries: using Diffusible Iodine-Based Contrast-Enhanced...' Jaimi Gray"

Catch me at 10.30am in the Science in 3D #ASIHin3D symposium at #JMIH25 today! Amphibians 🐸 Reptiles 🦎 CT scanning ☢️ Iodine 🧪 Anatomy 🧠

Picture of a powerpoint slide that reads "Science in 3D"

#ASIHin3D begins! An absolute banger line up of speakers today (including me @ 10.30). LET'S GO 🥳 #JMIH25

"Early bird gets the sperm" direct quote by @drscanley.bsky.social during Katherine Greenwald's amazing keynote on unisexual salamanders... And so #JMIH25 begins

Alert for those also arriving to St Paul for #JMIH25 on very little sleep and are also into sharks (I think there's a few of you 😉), the Lost Fox has a very strong coffee option called the "Hammerhead".... 🦈

Got it!

A coffee cup sitting on a table at an airport. Next to the coffee cup lies a pile of colorful stickers showcasing 3D renderings of CT scans

En route to the Twin Cities MN for #JMIH2025 ✈️ I'm bringing plenty of stickers for y'all so you have an excuse to hit me up and talk fish and herps 🐟🐢🐠🐡🐸🦎🐍🐊

Catch my talk in the #ASIHin3D symposium on Saturday...

I made these, they haven't been used for teaching yet though: bsky.app/profile/jaim...

You can buy models like this online, but they are pricey (100s of $ each or >$1000 a set). I made these using NSF funded *free* data (from the oVert project), a few bucks worth of PLA filament, and sandpaper & paint (a combo of automotive and acrylics).

Top: black and white 3D rendering of a dusky basslet fish Bottom left: purple/pink 3D rendering of the brain of the fish, with a scale bar representing 0.5 mm Bottom right: A photograph of a 3D printed and painted anatomical model of the fish brain on a white stand, with colors demonstrating anatomical regions.

Top: black and white 3D rendering of a midwife toad Bottom left: purple/pink 3D rendering of the brain of the frog, with a scale bar representing 1 mm Bottom right: A photograph of a 3D printed and painted anatomical model of the frog brain on a white stand, with colors demonstrating anatomical regions.

Top: black and white 3D rendering of a plated lizard Bottom left: purple/pink 3D rendering of the brain of the lizard, with a scale bar representing 3 mm Bottom right: A photograph of a 3D printed and painted anatomical model of the lizard brain on a white stand, with colors demonstrating anatomical regions.

I used my 3D printer to create educational anatomical models of the brains of fish, frog, & lizard 🐟🐸🦎 The (color-blind friendly) colors demonstrate anatomical regions, and the 🧠 are many times larger than their real size. They can be removed from their stands for closer examination/comparison 🧪

Seven 3D renderings of caecilians (limbless amphibians) arranged on a balck background. Each is rendered in a different color, from left to right and top to bottom: red, teal, electric blue, purple, green, orange, yellow.

Who are those sweet slippery noodles with tiny eyes? Caecilians of course! 🥰 I imaged these limbless amphibs for #oVertTCN using #diceCT to enhance the contrast of the soft tissues. You can find the datasets on MorphoSource with the other diceCT amphibians: www.morphosource.org/projects/000... 🧪

This gopher tortoise also features in my 2023 diceCT turtle paper: doi.org/10.1002/ar.2...

I used this specimen to create the world's first ever whole body diceCT turtle dataset!

Screenshot of the media page on MorphSource, showing specimen/media details on the left, and 3D viewer with controls on the right. A colored 3D model of a gopher tortoise skeleton is shown in the 3D viewer.

I also urge you to check out the re-vamped MorphoSource online 3D viewer! The team has been working on new features for it, including the ability to save annotations, take measurements, new navigation controls, & camera settings. You may not even need to download models to collect data you need!

image with black background, showing a colored 3D model of a gopher tortoise with bisected shell and transparent right side, revealing the skeleton inside. Shown in anterior (top), anterolateral (middle), and right lateral (bottom) views. An image of the museum specimen on a white background, with scale bar, is shown in the top left corner.

Can we just take a moment to appreciate turtle skeletons? 🐢🦴🤯 The original model of this gopher tortoise skeleton on Sketchfab (skfb.ly/ooVZS) is a crowd favorite & I've received requests for a downloadable version lately, so I uploaded a new one to MorphoSource: www.morphosource.org/concern/medi...

Done by hand, mostly with a thresholded 3D brush. No scripts! This one was segmented in 3D Slicer, and further mesh editing (clean up, simplification, colors) done in Blender.

Glad to see Vera et al. lead the way for 3D data sharing in Aus. I hope that Ozboneviz 🦴 shows great things that can happen when you share 3D data FAIR-ly. After working on oVert & seeing it be an amazing thing for US collections, it's somewhat poetic that this paper comes from my home state of SA 🥰

The result of three years’ worth of travel through Australia’s museum collections and three Universities, and heaps of help from the MorphoSource and oVert Teams @jaimiagray.bsky.social :

New Colorize Volume module Just added to 3D Slicer 5.5 is the new Colorize Volume module! I tried it on a fully segmented rattlesnake skull with really nice results comparable to the expensive proprietary software VGStudio Max....

Hello I would like to add that Slicer just keeps getting better - new modules are being written all the time. My fave is the Colorize Volume module they whipped up a couple years ago after I demo'ed the layer-style rendering in another (very expensive) software

discourse.slicer.org/t/new-colori...

All scans for this specimen were funded by NSF and #oVertTCN, and are available on MorphoSource, including contrast enhanced #diceCT scans! If you look closely, you can see that I had to digitally re-attach its tail to make the rendering ❤️‍🩹

www.morphosource.org/concern/biol...