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Rob Waterhouse

@rmwaterhouse.bsky.social

Director, Environmental Bioinformatics Group at SIB Swiss Institute of Bioinformatics @sib.swiss. Chair, European Reference Genome Atlas (ERGA, @ergabiodiv.bsky.social). #biodiversity #genomics www.rmwaterhouse.org

2,195 Followers  |  1,803 Following  |  1,800 Posts  |  Joined: 12.11.2024
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Posts by Rob Waterhouse (@rmwaterhouse.bsky.social)

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πŸ†• The @biogeneurope.bsky.social project - which now gives way to BGE+ - represented a landmark in European research collaboration, bringing together the #DNAbarcoding (@iboleurope.bsky.social) and #reference #genomes (@ergabiodiv.bsky.social) communities.

πŸ”“ Grant Proposal: doi.org/10.3897/rio.....

04.03.2026 11:58 β€” πŸ‘ 8    πŸ” 7    πŸ’¬ 1    πŸ“Œ 1
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Vector venom: venomics of Aedes albopictus reveals a large enzyme repertoire and novel cecropins with activity against E. coli - npj Drug Discovery npj Drug Discovery - Vector venom: venomics of Aedes albopictus reveals a large enzyme repertoire and novel cecropins with activity against E. coli

It's great to see our next vemomics paper out there! This time, our PhD student Ludwig milked hundreds of mosquitoes and examined their venom (yes, he milked them!). Check out how he did it and what we found in their venom. Great work! πŸ¦Ÿβ˜ οΈπŸ‘ www.nature.com/articles/s44...

03.03.2026 17:55 β€” πŸ‘ 3    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
Call for Applications: Doctoral Positions in the Life Sciences and Natural Sciences Ambitious candidates with a strong academic track recordΒ who wish to pursue their doctorate in one of the research areas listed below.

πŸ“£ Call for Applications: The University of Vienna invites applications for more than 40 fully funded doctoral positions across a broad range of disciplines in Life Sciences and Natural Sciences. πŸ‘¨β€πŸ”¬πŸ‘©β€πŸ”¬ #PhDSky #PhD #univie
πŸ“… Application period: 2 March – 27 March 2026, 12:00 CET

More information: ‡️

03.03.2026 11:52 β€” πŸ‘ 26    πŸ” 29    πŸ’¬ 0    πŸ“Œ 3
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EBP-affiliated projects worldwide are pushing the limits of what’s possible β€” driving innovation and the breakthroughs that make this moonshot real.
Global community = global progress 🌍🧬

@vertebrategenomes.bsky.social
@ergabiodiv.bsky.social
@catbiogenoma.bsky.social
@biogeneurope.bsky.social

30.01.2026 19:36 β€” πŸ‘ 8    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0
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Training Modules - Threatened Species Initiative Welcome to the Threatened Species Initiative (TSI) open online course: Conservation Genomics for Threatened Species Management. The training modules are presented by a range of Australian…

πŸ’‘ #KnowledgeHighlight | Conservation #Genomics for Threatened Species Management @ausbiocommons.bsky.social 🐨 threatenedspeciesinitiative.com/training-mod...
Explore open-access training materials in the ERGA #KnowledgeHub ➑️ knowledge.erga-biodiversity.eu @bioplatformsaus.bsky.social #conservation

02.03.2026 08:30 β€” πŸ‘ 2    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
MBE | The role of society journals in protecting the scientific record

MBE | The role of society journals in protecting the scientific record

MBE Editors-in-Chief Claudia Russo and Brandon Gaut publish a new editorial on the role of society journals in protecting the scientific record.

πŸ”— doi.org/10.1093/molbev/msag022

#evobio #molbio #societyjournal

@claurusso.bsky.social @bsgaut.bsky.social

03.03.2026 10:18 β€” πŸ‘ 11    πŸ” 5    πŸ’¬ 1    πŸ“Œ 1
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Pangenomes, really?

Most early β€œpangenomes” = oligogenomes (oligo, Gr., few).

More recent β€œpangenomes” generally = poligenomes (polis, Gr., many).

True pangenomes (pas, Gr., every/all) would be rare indeed.

πŸ™πŸΌ @zbao.bsky.social for pointing out his review.

www.nature.com/articles/s41...

02.03.2026 18:19 β€” πŸ‘ 32    πŸ” 10    πŸ’¬ 2    πŸ“Œ 0

Finally published! We first uploaded this preprint in 2022 but dropped it after frustrating reviews.
It was well received and cited, motivating us to revisit it.
We added new content, including simulations and a proof-of-concept genomic green status assessment.
#consgen #popgen #PopulationGenomics

17.02.2026 16:31 β€” πŸ‘ 37    πŸ” 9    πŸ’¬ 1    πŸ“Œ 0
Quote by Luthando Dziba: This year’s World Wildlife Day theme, β€œMedicinal and Aromatic Plants: Conserving Health, Heritage and Livelihoods”, focuses attention on the vital contributions that plants make to human wellbeing, and the roles they play in culture as well as the global economy. But with a million species of plants and animals currently threatened by extinction, medicinal and aromatic plants β€” including plants which have not yet been described by science β€” are also in jeopardy.

Quote by Luthando Dziba: This year’s World Wildlife Day theme, β€œMedicinal and Aromatic Plants: Conserving Health, Heritage and Livelihoods”, focuses attention on the vital contributions that plants make to human wellbeing, and the roles they play in culture as well as the global economy. But with a million species of plants and animals currently threatened by extinction, medicinal and aromatic plants β€” including plants which have not yet been described by science β€” are also in jeopardy.

On this #WorldWildlifeDay, we can recommit to action that recognizes nature’s values in all their forms β€” as a source of medicine and culture, pillars of healthy ecosystems, and foundations of resilient communities. 🌍

πŸ§ͺ Read more from 🏑 IPBES ES, Luthando Dziba: https://www.ipbes.net/node/97615

03.03.2026 15:48 β€” πŸ‘ 11    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0
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Discover the new SIB learning paths 🧬 Structured #Bioinformatics training from beginner to advanced levels, including machine learning and omics data analysis. Plan your next learning step and share within your network

03.03.2026 13:12 β€” πŸ‘ 8    πŸ” 6    πŸ’¬ 0    πŸ“Œ 0
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Convergent evolution of hexenal isomerases in Lepidoptera and plants - Nature Ecology & Evolution Phylogenetic and functional analyses across 34 Lepidoptera and 183 plant species show that hexenal isomerases found in Lepidoptera exhibit functional convergence with those found in plants despite hav...

Phylogenetic and functional analyses across 34 Lepidoptera and 183 plant species show that hexenal isomerases found in Lepidoptera exhibit functional convergence with those found in plants despite having evolved independently from unrelated enzyme families πŸ§ͺ www.nature.com/articles/s41...

03.03.2026 16:42 β€” πŸ‘ 18    πŸ” 13    πŸ’¬ 0    πŸ“Œ 1

We can help protect insect biodiversity by:
🐞 Expanding research
🐜 Monitoring insects & related species across landscapes
πŸͺ° Promoting improved pest management techniques
πŸ¦— Protecting & restoring habitat
🐝 Facilitating collaboration between entomologists, other scientists, policymakers & citizens

03.03.2026 17:00 β€” πŸ‘ 4    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
The image is a collage of five insect photos (an oak treehopper, desert ironclad beetle, red-blue checkered beetle, blue morpho, and dragonfly). In the center, there is white text on a blue background that says, β€œβ€œThe little things that run the world.” -E.O. Wilson.” There is also the hashtag #WorldWildlifeDay and the ESA logo.

The image is a collage of five insect photos (an oak treehopper, desert ironclad beetle, red-blue checkered beetle, blue morpho, and dragonfly). In the center, there is white text on a blue background that says, β€œβ€œThe little things that run the world.” -E.O. Wilson.” There is also the hashtag #WorldWildlifeDay and the ESA logo.

Today, March 3, is #WorldWildlifeDay! More than half of all species on Earth are insects and their relativesβ€”or in the words of conservationist E.O. Wilson, "the little things that run the world."

03.03.2026 17:00 β€” πŸ‘ 34    πŸ” 9    πŸ’¬ 1    πŸ“Œ 0
A sedge. It may look unassuming but its genome has several unusual features.

A sedge. It may look unassuming but its genome has several unusual features.

Why do the chromosomes of cyperids (sedges & rushes) split and fuse so regularly on evolutionary timescales?

Is it because they have so many centromeres?

Our new preprint, the first major paper of my PhD, addresses this question. πŸ§΅β¬‡οΈ 1/12

www.biorxiv.org/content/10.6...

03.03.2026 15:57 β€” πŸ‘ 23    πŸ” 12    πŸ’¬ 1    πŸ“Œ 2

#biodiversity #bioinformatics Summer School ... 21-26 June in Siegen, Germany co-organised by @sib.swiss & @denbi.bsky.social
www.sib.swiss/training/cou...
🟒 eDNA & ecosystems
🟣 pangenome diversity
πŸ”΅ population genetics
🟑 comparative genomics
Register to apply, selections will start from March 16th

03.03.2026 11:03 β€” πŸ‘ 8    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0

#biodiversity #bioinformatics Summer School ... 21-26 June in Siegen, Germany co-organised by @sib.swiss & @denbi.bsky.social
www.sib.swiss/training/cou...
🟒 eDNA & ecosystems
🟣 pangenome diversity
πŸ”΅ population genetics
🟑 comparative genomics
Register to apply, selections will start from March 16th

03.03.2026 11:03 β€” πŸ‘ 8    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0
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Actions and actors driving transformative change for global sustainability - Nature Sustainability A bibliometric analysis of more than four million scholarly documents highlights the need for a more inclusive approach to research on actors and actions needed for transformative change towards a jus...

Drawing on work from the @ipbes.net π“π«πšπ§π¬πŸπ¨π«π¦πšπ­π’π―πž π‚π‘πšπ§π πž π€π¬π¬πžπ¬π¬π¦πžπ§π­ & bibliometric analysis of >4 million scholarly documents - a more inclusive approach needed to research on actors and actions www.nature.com/articles/s41...

03.03.2026 07:23 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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One million of the world’s estimated 8 million species are threatened with extinction.

But hope is not lost.

#GenerationRestoration is reviving habitats bringing back homes for threatened species.

This #WorldWildlifeDay, discover six species making a comeback: www.unep.org/news-and-sto...

03.03.2026 07:15 β€” πŸ‘ 38    πŸ” 13    πŸ’¬ 2    πŸ“Œ 3
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Biodiversity Genomics Europe (BGE) Project – Abridged Grant Proposal The Biodiversity Genomics Europe (BGE) Project has the overarching aim of accelerating the use of genomic science to enhance understanding of biodiversity, monitor biodiversity change, and guide inter...

The #Biodiversity #Genomics #Europe project comprised activities focused on #DNA Barcoding (Barcoding Stream) and Reference #Genome Generation (Genomes Stream) for eukaryotic species across Europe riojournal.com/article/1875...

01.03.2026 11:02 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Annotating genomes at increased scale and resolution - Nature Reviews Genetics In this Review, Ji et al. overview how rapidly advancing experimental and computational methods are enabling improved and automated annotation of gene structure and function, providing researchers wit...

The growing number of sequenced #genomes provides a positive feedback loop, in which database searches become more effective and shared sequence patterns emerge more clearly www.nature.com/articles/s41... #biodiversity #genomics

01.03.2026 10:57 β€” πŸ‘ 26    πŸ” 8    πŸ’¬ 0    πŸ“Œ 0

Be part of the global biodiversity genomics community πŸŒπŸ§¬πŸš€

Join the conversation by referencing biodiversity genomics or 🌍🧬

28.02.2026 02:44 β€” πŸ‘ 12    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0
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Limitations of molecular dating using constant birth–death rate priors in deep time reflected in Brachiopoda evolution Molecular dating often struggles to align with fossil records when divergence times are estimated in deep evolutionary history, particularly during th…

Limitations of molecular dating using constant birth-death rate priors in deep time reflected in Brachiopoda evolution www.sciencedirect.com/science/arti...

28.02.2026 05:49 β€” πŸ‘ 25    πŸ” 13    πŸ’¬ 0    πŸ“Œ 0
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Huge news 🌍🧬
The Protist 10,000 Genomes Project is joining the Earth BioGenome Project.
Protists may represent the majority of eukaryotic diversity β€” yet only a tiny fraction have reference genomes.
Time to change that. πŸš€βœ¨
Learn more πŸ‘‰ ngdc.cncb.ac.cn/p10k/
#EBP #Protists #Genomics #TreeOfLife

27.02.2026 16:40 β€” πŸ‘ 46    πŸ” 19    πŸ’¬ 0    πŸ“Œ 0
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The biodiversity, genomics, ecology and evolution of mushroom-forming fungi - Nature Reviews Biodiversity Mushroom-forming fungi have along evolutionary history and a suite of important ecological roles. This Review highlights advances in understanding of Agaricomycetes evolution and ecology driven by gen...

Everything you always wanted to know about mushroom-forming fungi! Great collab with amazing mycologists. Thanks Laszlo Nagy for leading this effort!

www.nature.com/articles/s44...

03.12.2025 13:21 β€” πŸ‘ 69    πŸ” 34    πŸ’¬ 2    πŸ“Œ 0
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New #OpenAccess research by M. Prous, @niinakiljunen.bsky.social et al. in #RESSystematicEnt found that multiple full-length variants of the mitochondrial COI DNA barcode region are prevalent in north European sawflies.
doi.org/10.1111/syen.70031

@gkergoat.bsky.social @wileyecology.bsky.social

27.02.2026 14:02 β€” πŸ‘ 15    πŸ” 6    πŸ’¬ 1    πŸ“Œ 2
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Evolution, genomicsΒ and conservation of butterflies and moths - Nature Reviews Biodiversity Butterflies and moths are key indicators of functioning and healthy ecosystems around the world. This Review describes the evolutionary history of the order Lepidoptera and tracks shifts in researcher...

Evolution, genomics and conservation of butterflies and moths
www.nature.com/articles/s44...

28.02.2026 08:37 β€” πŸ‘ 3    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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European red list of bees - Publications Office of the EU

European Red List of Bees
op.europa.eu/en/publicati...

28.02.2026 09:03 β€” πŸ‘ 13    πŸ” 5    πŸ’¬ 0    πŸ“Œ 0
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The bee season has also begun here. Many queen bumblebees (Bombus terrestris, B. pratorum, B. lapidarius and B. hypnorum) and solitary bees (Andrena vaga, A. bicolor, Xylocopa violacea, Osmia cornuta) have been flying around Braunschweig since this week. #BeesUp

28.02.2026 06:24 β€” πŸ‘ 27    πŸ” 10    πŸ’¬ 1    πŸ“Œ 2

It's that time of the year again!

28.02.2026 10:12 β€” πŸ‘ 16    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
An historic black and white illustration of a paper nautilus floating on the ocean. There are boats, a city and hills in the background.

An historic black and white illustration of a paper nautilus floating on the ocean. There are boats, a city and hills in the background.

πŸŽ‰ Huge news for BHL: The Field Museum is taking over the hosting of BHL’s website, servers & infrastructure, ensuring long-term stability and access for its 63+ million pages of open biodiversity literature. Learn more:
blog.biodiversitylibrary.org/2026/02/tran...
#BHLTransition #ILoveBHL 🌍 πŸ“š πŸ§ͺ

27.02.2026 14:31 β€” πŸ‘ 340    πŸ” 136    πŸ’¬ 8    πŸ“Œ 25