Nikita Vladimirov

Nikita Vladimirov

@nvladimus.bsky.social

Imaging scientist, light-sheet aficionado, #mesoSPIM developer, open source contributor. Building cool microscopes for cool people. www.mesospim.org www.github.com/nvladimus

409 Followers 213 Following 82 Posts Joined Dec 2024
1 day ago

Myself and @immunoah.bsky.social are looking to hire a postdoctoral scientist to build a next-generation high-throughput high-resolution light sheet microscope for imaging entire cleared organs/tissues and to further develop live & fixed tissue clearing methods.

www.nature.com/naturecareer...

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1 day ago
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Advanced Microscopy Facility Sainsbury Wellcome Centre

Our London-based imaging facility is currently looking for a research software engineer to help develop analysis pipelines for spatial omics. Job advert accessible via our homepage: swcmicroscopy.com Our Neuroinformatics facility also hiring for related roles: neuroinformatics.dev

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2 days ago

Wow

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2 days ago
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Tiny, transparent, and now charted! Our brain atlas of adult Danionella cerebrum includes >200 annotated regions, 29 whole-brain in situs, and male/female reference volumes – openly available, versioned and extendable. Work by @nkadobyansky.bsky.social and team.
www.biorxiv.org/content/10.6...

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5 days ago
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Thanks to AI, the comprehensive #mesoSPIM-control documentation is finally here πŸŽ‡
mesospim.github.io/mesoSPIM-con...

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5 days ago

Totally. I feel I can do meaningful things again working on the code 1-2h a week in a fragmented schedule. Its like having an actual software team member (or two).

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1 week ago
A cochlea imaged in light-sheet microscopy (right) with staining for spiral ganglion neurons (red) and inner hair cells (blue). You will develop AI-based methods to analyze these structures, for example via segmentation of the individual cells (right) that will support gene therapy development for hearing loss and a better overall understanding of the anatomy of hearing.

Looking for a PhD position at the intersection of AI, imaging, and gene therapy? Apply for this position in my lab: tinyurl.com/2a2v6tvx

Part of sfb1690.uni-goettingen.de to study hearing, vision, and more.

Plus, you can create pretty pictures as the one below :).

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1 week ago
This glass wafer could back up your phoneβ€”and last 10,000 years

Writers for the Superman, Star Trek, and Mission Impossible franchises all dreamed up the idea of storing libraries of data in glass.

Now, Microsoft researchers say they are bringing this vision closer to reality. Learn more: https://scim.ag/4cZ9aJd

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1 week ago

Indeed! I managed to generate a decent online documentation for our #mesoSPIM project in 2h, something I was procrastinating for 5 years. Feels like magic.

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2 weeks ago

I have mixed feelings about the music choice, but the tutorial is NICE! Thank you!

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3 weeks ago
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GitHub - saalfeldlab/lens-correct: Correcting lens-distortion in confocal stacks Correcting lens-distortion in confocal stacks. Contribute to saalfeldlab/lens-correct development by creating an account on GitHub.

If your imaging system has poorly characterized constant distortions leading to chromatic aberration, shoddy stitching, or false measurements (the answer is likely yes), you may want to give this tool a try. Native installers for Linux, Mac, Win under Releases github.com/saalfeldlab/...

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1 month ago
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I used this one for sealing coverslips in contact with argessive medium (BABB), worked well for me.

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1 month ago

Silicon sealant, the type used eg for aquariums, is extremely stable, should work for this application.

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1 month ago

Tip: never use superglue anywhere near optics. It slowly outgasses and makes optical surfaces around it hazy. For coverslips one can use nail polish, Picodent dental glue, or silicon from hardware store.

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1 month ago
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A high-resolution, easy-to-build light-sheet microscope for subcellular imaging An accessible light-sheet microscope delivers subcellular-resolution, multicolor volumetric, and live-cell imaging, lowering barriers to state-of-the-art performance.

In @elife.bsky.social: A high-resolution, easy-to-build light-sheet microscope for subcellular imaging doi.org/10.7554/eLif...

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1 month ago
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We have two funded postdoctoral positions available. Topics encompass:

-Next gen light-sheet fluorescence microscopy instrumentation

-Structured illumination microscopy and other approaches to extend the resolution limit.

-Nonlinear microscopy combined with adaptive optics / phase conjugation

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2 months ago

Agreed. Strategic quitting is a power move that can open new opportunities. But it must be strategic, not because one is simply tired and needs a vacation.

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2 months ago
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Has napari helped your research this year? Why not say thank you to free and open source software by making a small donation? Every bit helps your friendly core team fix bugs and bring new features to life! CZI will match up to $75K in donations! opencollective.com/napari/donate

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3 months ago

Happy to hear that!

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3 months ago

Nice work, bravo!

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3 months ago
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BigVolumeBrowser: a new 3D multi volume/mesh/point clould (SMLM) data viewer Hello everyone, I’d like to share with you another 3D viewer for FIJI, BigVolumeBrowser (full documentation link). Itβ€˜s a first initial public release, so there is still space for improvements. Le...

Finally, the first public release of #BigVolumeBrowser, so after teasers, you can try it yourself. For details, please check the announcement post (1/2)
forum.image.sc/t/bigvolumeb...

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4 months ago

Your talk knocked everyone out! Everyone was speechless and could only say "wow, didn't expect that" πŸ™‚Thank you for joining us!

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4 months ago
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The 10 Years of #mesoSPIM Symposium was a blast! πŸ”ŸπŸŽ‚The excitement was palpable, and we were all inspired. Three days flew by fast! Thanks to all the attendees, speakers, organizing team, and our sponsors for making it such a memorable event! Let's shape the next 10y of microscopy together! πŸ’ͺβ€οΈπŸ”¬

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5 months ago
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Direct single-molecule detection and super-resolution imaging with a low-cost portable smartphone-based microscope - Nature Communications Loretan and colleagues present a low-cost smartphone-based microscope capable of detecting single-molecule fluorescence. This approach opens doors to personalised and widely distributed applications in diagnostics, biosensing, and science education.

This is insane. 13 years ago we bought a million dollar #microscope to do this type of super-resolution imaging. Today, all you need is a smartphone and a few hundred bucks of off-the-shelf components 🀯

www.nature.com/articles/s41...

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5 months ago
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Job opportunity at the University of Zurich! πŸ“’

We are looking for a π‹πšπ›π¨π«πšπ­π¨π«π² π“πžπœπ‘π§π’πœπ’πšπ§ / π‘πžπ¬πžπšπ«πœπ‘ π€π¬π¬π’π¬π­πšπ§π­ (πŸ’πŸŽ%) to join our Microscopy Innovation Platform (MIP), an open-source initiative focused on advancing and making light-sheet and multiphoton microscopy accessible to researchers.

1/3

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5 months ago
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Research engineer in Bioimage Analysis for the researchers of the inIdEx FORMULA Hi all We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? The position is in the Instit...

Job alert!

We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?

See also on the forum:
forum.image.sc/t/research-e...

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5 months ago

We are using them in real life :) We are working on making them more readily available and user-friendly in the near future.

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5 months ago
CBIAS2025 flier, showing the conference logo, listing the topics, confirmed speakers and sponsors. On the top right corner, a QR code is available to access the registration page.

The program for the #CBIAS2025 is now live – space is limited, so register now to secure your spot! 24th-25th Nov, Wellcome Trust, London (UK) - see you there!

πŸ”—β¬‡οΈ
www.crick.ac.uk/whats-on/cri...

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5 months ago

"Seems"? What's the scientific evidence? Any data supporting that? This is not science, this is someone's opinion. 🀣

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5 months ago

If there is a way in, there should be a way out.

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