Alex Hoischen's Avatar

Alex Hoischen

@ahoischen.bsky.social

Genomic technologies: WES/WGS, long-read sequencing, optical genome mapping, somatic mutations; Immuno-genomics: rare diseases; immunodeficiencies; inborn errors of immunity; clonal hematopoiesis https://shorturl.at/MxQ7O https://www.immuno-genomics.com

988 Followers  |  381 Following  |  171 Posts  |  Joined: 18.11.2024  |  1.9204

Latest posts by ahoischen.bsky.social on Bluesky

Great to see our new preprint our. Thanks for everybody of the HiFi Solves EMEA consortium for their valuable contribution - this study was driven by the wonderful @bartvds.bsky.social @radboudumc.bsky.social!
Exciting to show clinical utility of lrGS in multi-center study.

07.11.2025 12:50 β€” πŸ‘ 8    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
Post image

A new multi-center study from the EMEA HiFi Solves Consortium shows the clinical research potential of HiFi. Combined with our latest informatics pipeline, HiFi identified 100% of clinically relevant variants across 11 complex regions, including those short reads missed.

πŸ‘‰ bit.ly/4oqMWCY

05.11.2025 16:40 β€” πŸ‘ 10    πŸ” 2    πŸ’¬ 0    πŸ“Œ 1

HiFi sequencing accurately identifies clinically relevant variants in paralogous genes https://www.medrxiv.org/content/10.1101/2025.10.29.25339045v1

31.10.2025 19:40 β€” πŸ‘ 2    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0
Post image

Our November 2025 issue is now live: go.nature.com/4hlXnVx
Topics include: the impact of structural variation on the 3D genome in disease; single-cell DNA sequencing of somatic mutations; the role of transcription compartments in gene regulation; synonymous mutations and their consequences

15.10.2025 11:54 β€” πŸ‘ 6    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0
Preview
Structural variants in the 3D genome as drivers of disease Nature Reviews Genetics - Disruption of the 3D genome caused by structural variation contributes to developmental disorders and cancer. The authors review the causes and molecular and clinical...

Our featured article: Structural variants in the 3D genome as drivers of disease - Review by Varun K. A. Sreenivasan, VerΓ³nica Yumiceba & Malte Spielmann go.nature.com/4oiPdPQ
Free to read here: rdcu.be/eu0KR

15.10.2025 11:54 β€” πŸ‘ 6    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
Post image Post image

Super excited about first Shendure/Baker Lab collaboration & preprint on a multiplex sequencing-based strategy for screening de novo proteome editors in mammalian cells. Kudos to the brilliant Chase Suiter (not here) & @greenahn.bsky.social on the work! Preprint here:
www.biorxiv.org/content/10.1...

14.10.2025 18:44 β€” πŸ‘ 97    πŸ” 33    πŸ’¬ 0    πŸ“Œ 0

With #ashg25 starting my #FOMO is getting real - so sorry to miss this year’s edition- esp. to continue to build bridges between our amazing societies @geneticssociety.bsky.social & @eshg.bsky.social.
Have a fab conference all - regards to all friends and collaborators and keep the β€œtweets” coming!

14.10.2025 18:31 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Post image

#PacBio announces major upcoming advances for #Revio and #Vega designed to lower genome costs, expand multiomic capabilities, and support regulated research.

The SPRQ-Nx chemistry, now in beta access, delivers complete genomes for under $300 at scale.

View the press release: bit.ly/4o06eyH

14.10.2025 15:33 β€” πŸ‘ 8    πŸ” 7    πŸ’¬ 0    πŸ“Œ 2
PheedLoop PheedLoop: Hybrid, In-Person & Virtual Event Software

Getting excited for #ASHG25. The must see talk is tomorrow at 1:30 by Qiuhui (Iris) Li presenting the first large-scale integration of long-read genome sequencing with electronic health record data across >1000 All of Us participants meetings.ashg.org/event/ASHG25...

14.10.2025 17:40 β€” πŸ‘ 43    πŸ” 9    πŸ’¬ 1    πŸ“Œ 0
PacBio: $300 Genome Via Chemistry Update ASHG is here in Boston, just down the street from Ginkgo's HQ.Β  I'm in a new role in Ginkgo Automation, trying to convince the NGS world tha...

PacBio: $300 Genome Via Chemistry Update 🧬πŸ–₯️

omicsomics.blogspot.com/2025/10/pacb...

14.10.2025 13:47 β€” πŸ‘ 22    πŸ” 9    πŸ’¬ 0    πŸ“Œ 0
Post image

πŸ“’ πŸ“’ πŸ“’ Join African Society of Human Genetics and @eshgyoung.bsky.social lunch seminar series πŸ“’ πŸ“’ πŸ“’

πŸ“… The first episode is on 2nd October 13:00-14:00 CET (12:00-13:00 WAT)

Join us on teams (no pre-registration needed):
lnkd.in/ecwt-Nva
Meeting ID: 328 781 679 974 3
Passcode: F63nX7JV

25.09.2025 08:28 β€” πŸ‘ 3    πŸ” 2    πŸ’¬ 0    πŸ“Œ 1
Post image 02.10.2025 07:08 β€” πŸ‘ 2    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

Thanks to everyone who contributed to this wonderful event!

02.10.2025 07:08 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

What a great day and thesis defense by Cas van der Made. A very proud PI moment for me, Frank van de Veerdonk and Mihai Netea!
Cas not only presented his impressive thesis - but his outstanding offer was recognized with a β€œcum laude” distinction. Well done and very well deserved!

02.10.2025 07:08 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
How Stowers Scientists Found the DNA Site Where Robertsonian Chromosomes Fuse
YouTube video by Stowers Institute for Medical Research How Stowers Scientists Found the DNA Site Where Robertsonian Chromosomes Fuse

πŸš‚ The T2T train keeps rolling: "The formation and propagation of human Robertsonian chromosomes" with Gerton and Garrison labs is out! What's a Robertsonian chromosome? Let Jen tell you herself in this great video, or read our paper: [1/3]
πŸ“Ί youtu.be/JmlY5omxQVc
πŸ“„ www.nature.com/articles/s41...

24.09.2025 18:48 β€” πŸ‘ 44    πŸ” 28    πŸ’¬ 4    πŸ“Œ 2

Wow! If this holds up, it will be a triumph of science (i.e., of many hundreds of dedicated scientists over decades) over a devastating disease.

24.09.2025 13:12 β€” πŸ‘ 35    πŸ” 5    πŸ’¬ 0    πŸ“Œ 1
Preview
Huntington's disease successfully treated for first time One of the most devastating diseases finally has a treatment that can slow its progression and transform lives, tearful doctors tell BBC.

Wow!
Amazing - and first glimpses of hope for patients and families with this devastating rare disease.

www.bbc.com/news/article...

24.09.2025 12:40 β€” πŸ‘ 11    πŸ” 4    πŸ’¬ 1    πŸ“Œ 0
Post image Post image Post image

Great start of the β€œ3rd Channelopathy Meeting TΓΌbingen
Genetic epilepsies and other neuronal ion channel disorders: Mechanisms and therapeutic perspectives; 23rd-25th September 2025, TΓΌbingen, Germany”.

Here the first DNA was isolated - ever.

23.09.2025 21:11 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Post image

Today was the last day of the 35th EuroDysmorpho Conference in Vilnius. The ESHG-Young contributed to the scientific content, and Silvia Kalantari, our current chair, had the chance to showcase our activities.

See you all in Pavia for #EuroDysmorpho 2026!

@eshg.bsky.social @silk93.bsky.social

20.09.2025 13:22 β€” πŸ‘ 3    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0
Post image Post image

Followed by a talk by my fabulous postdoc Bart van der Sanden demonstrating that long-read genome sequencing is not only very accurate in identifying de novo mutations for all variant types; but excitingly also promises extra yield of sr-exome/genome sequencing between 7-17%!!!

16.09.2025 09:09 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Post image Post image

Starting day two at #nvhg2025 with some great talks!
Amongst them my wonderful colleague Richarda de Voer talking about the role for postzygotic mutations in cancer.

16.09.2025 09:09 β€” πŸ‘ 2    πŸ” 1    πŸ’¬ 1    πŸ“Œ 0
Post image

…and another update: good and bad news!
Short reads got shorter - and long reads even longer…

15.09.2025 18:54 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

…time to fasten your seatbelts @nvhg.bsky.social #nvhg2025 for the evening plenary by the one-and-only Chris Mason.
…I’d be disappointed if he could squeeze the big 500degree plan in less then 200 slides!

15.09.2025 15:41 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Post image

…and long vs short reads are almost everywhere at #nvhg2025! ;-)

15.09.2025 15:37 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Post image

Great delivery of his #nvhg2025 presentation by @wolfram-hops.bsky.social!
…the future of germline testing is clear now: generic first tier testing by long-read genome sequencing!

15.09.2025 13:40 β€” πŸ‘ 2    πŸ” 3    πŸ’¬ 1    πŸ“Œ 0
Post image

And of course also all technicians and PhD candidates are also crucial to our group. Keep up the great effort!

15.09.2025 08:54 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

It’s through your drive, dedication, supervision skills that our lab thrives. But more importantly I appreciate how wonderful human beings you are that enrich not only our group but our departments and community!

15.09.2025 08:54 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

This week is β€œpostdoc” appreciation week! And yes, I am extremely grateful for all amazing work done by postdocs - past and present. In particular the wonderful Tuomo Mantere @bartvds.bsky.social @lydiasagath.bsky.social Cas van der Made Mariolina Bruno & Emil Vorsteveld.

15.09.2025 08:54 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
Post image

Day one #nvhg2025 kicked of by the great Hans Clevers - amazing how organoids help basic scientific understanding all the way to therapies!

15.09.2025 08:12 β€” πŸ‘ 1    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0

Make sure you see the talks of our @radboudumc.bsky.social very one @wolfram-hops.bsky.social today on 1000 @pacbio.bsky.social genomes for clinical utility; and @bartvds.bsky.social tomorrow on 100 HiFi trio genomes for NDD discoveries.

15.09.2025 06:24 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

@ahoischen is following 20 prominent accounts