Octavio Reyes-Matte's Avatar

Octavio Reyes-Matte

@octavio-rm.bsky.social

PhD student Waterfowl appreciator ๐Ÿฆ†๐Ÿชฟ๐Ÿฆข Bioimage analysis ๐Ÿ”ฌ, Quantitative Biology๐Ÿ“Š and Deep Learning ๐Ÿ’ป Trying to understand the diversity of bacterial cell size and its evolution From ๐Ÿ‡จ๐Ÿ‡ฑ in ๐Ÿ‡ฉ๐Ÿ‡ช he/him

384 Followers  |  1,176 Following  |  25 Posts  |  Joined: 18.11.2024  |  2.407

Latest posts by octavio-rm.bsky.social on Bluesky

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a crab is crawling on a sandy beach ALT: a crab is crawling on a sandy beach

Crabs! Everything eventually becomes crab ๐Ÿฆ€๐Ÿฆ€๐Ÿฆ€

05.08.2025 18:29 โ€” ๐Ÿ‘ 6    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

and that they have a probability of giving the wrong output

18.06.2025 17:04 โ€” ๐Ÿ‘ 4    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

I think it would be very interesting to learn how bioimage analysts can insert themselves/become part of groups that are zero computational (full bench), hybrid, or full computational. What skills can they bring and also they can learn! ๐Ÿค“๐Ÿ”ฌ

12.03.2025 19:21 โ€” ๐Ÿ‘ 4    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Cannot really emphasize how amazing this tool is! For me, it checks many important boxes:
- feels intuitive
- powerful
- customizable
- flexible

Many congratulations to @anwaiarchit.bsky.social , @cppape.bsky.social and the whole team! Looking forward to play with it and push its limits! ๐Ÿ˜๐Ÿ’ป

13.02.2025 19:12 โ€” ๐Ÿ‘ 13    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Absolutely beautiful work! One channel: multi structure separation? The amount of information you'll be able to extract with multiple fluorophores ๐Ÿคฉ๐Ÿคฉ๐Ÿคฉ

11.02.2025 19:16 โ€” ๐Ÿ‘ 4    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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three men in suits and ties are sitting at a table talking to each other . ALT: three men in suits and ties are sitting at a table talking to each other .
29.12.2024 20:47 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Hobbes maybe, but Calvin would have been gollumized in no time

25.12.2024 00:27 โ€” ๐Ÿ‘ 9    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Absolutely beautiful work ๐Ÿ˜๐Ÿ˜ congratulations! ๐Ÿ”ฌ๐Ÿค–

17.12.2024 22:31 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Could this be a start to go the "quality not quantity" route?

17.12.2024 12:18 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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a black and white photo of a mailbox with a person standing in it . ALT: a black and white photo of a mailbox with a person standing in it .
14.12.2024 11:26 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

I was recently at a conference where they have people small adhesives joined by Velcro, so you can hang the poster but also easily get it down after the session

07.12.2024 23:47 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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New report highlights the scientific impact of open source software Two of the scientists who won this yearโ€™s Nobel Prize for cracking the code of proteinsโ€™ intricate structures relied, in part, on a series of computing

"Scientists collaborate โ€” funders must, too"

@dartar.bsky.social & @k8hert.bsky.social

www.statnews.com/sponsor/2024...

04.12.2024 10:21 โ€” ๐Ÿ‘ 30    ๐Ÿ” 17    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 2
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And the 3D projection of the neural crest and the stacks

29.11.2024 23:29 โ€” ๐Ÿ‘ 4    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Just realized that what I intended to upload as GIF was just as an image ): So here they are first going through the Z stacks

29.11.2024 23:25 โ€” ๐Ÿ‘ 9    ๐Ÿ” 2    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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But of course, why not trying to segment the stained single cells? Cellpose3 with an amazing out of the box performance! A truly fantastic and powerful software by @computingnature.bsky.social and @marius10p.bsky.social

(masks rendered with the glasbey palette using MorphoLibJ)!

29.11.2024 20:37 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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While my main focus is bacteria (for now), for my first #FluorescenceFriday I couldn't resist posting these beautiful neural crest immunofluorescence images of an embryo, by my fellow PhD student Elio Escamilla

29.11.2024 20:34 โ€” ๐Ÿ‘ 11    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

This is absolutely gorgeous ๐Ÿ˜๐Ÿ˜

28.11.2024 13:01 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

You're welcome! But definitely would be cool to train an LLM only on specific literatures ๐Ÿค“

28.11.2024 09:09 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

@adileyasar.bsky.social

28.11.2024 09:04 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

A convolution of image analysts? ๐Ÿง

26.11.2024 14:43 โ€” ๐Ÿ‘ 5    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Could I join even if I'm relatively new? ๐Ÿ˜

26.11.2024 14:10 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Bonus! It also allows for colorblind checking as well!

25.11.2024 13:58 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

The Downward Spiral and The Fragile, by Nine Inch Nails

24.11.2024 22:16 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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๐ŸŽจ In case anyone needโ€ฆ

The NIH BioArt Source is an awesome library of *free* professionally drawn illustrations for scientific presentations or figures. Downloadable in HD. Thank you NIH for this invaluable tool ๐Ÿ™!

Check it out ๐Ÿ‘‡
bioart.niaid.nih.gov

23.11.2024 15:49 โ€” ๐Ÿ‘ 1208    ๐Ÿ” 495    ๐Ÿ’ฌ 45    ๐Ÿ“Œ 28

Definitely a cool read!

22.11.2024 12:47 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Direct streaming of an #OMERO dataset in #BigDataViewer from the public server omero-tim.gerbi-gmb.de (dataset from the Workshop 35). Thank you Tom and @gerbi.bsky.social !

20.11.2024 13:55 โ€” ๐Ÿ‘ 71    ๐Ÿ” 18    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 2

As a user, someone overwriting your acquisition conditions โ˜น๏ธ

19.11.2024 15:53 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0

Hi everyone! Looking to connect (back) with the people from the bird site! Always down to chat about imaging, science and music in general ๐Ÿ‘‹

18.11.2024 15:50 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

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