Octavio Reyes-Matte's Avatar

Octavio Reyes-Matte

@octavio-rm.bsky.social

PhD student Waterfowl appreciator πŸ¦†πŸͺΏπŸ¦’ Bioimage analysis πŸ”¬, Quantitative BiologyπŸ“Š and Deep Learning πŸ’» Trying to understand the diversity of bacterial cell size and its evolution From πŸ‡¨πŸ‡± in πŸ‡©πŸ‡ͺ he/him

401 Followers  |  1,197 Following  |  32 Posts  |  Joined: 18.11.2024  |  2.2401

Latest posts by octavio-rm.bsky.social on Bluesky

For instance, have you wondered what would happen if Anthropic decided that trans authors's work was going to be cited less? Or the global south? Because you can definitely do that (Musk did that with Grok and we all know what happened. Those are the things that worry me, as a scholar and a person

21.10.2025 11:51 β€” πŸ‘ 12    πŸ” 3    πŸ’¬ 0    πŸ“Œ 0
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a man with a pumpkin on his head is dancing in a cemetery with the words * spooky noises.com * ALT: a man with a pumpkin on his head is dancing in a cemetery with the words * spooky noises.com *
12.10.2025 22:18 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

(base) pip intall tensorflow

12.10.2025 19:48 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

(base) pip intall tensorflow

12.10.2025 19:47 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Apply now! Apply to become a Max Planck Research Group Leader. Max Planck Research Groups - Announcement 2024.

would a Max Planck Instute work? They have open applications until mid october: www.mpg.de/career/max-p...

25.09.2025 19:55 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

How cool is that! Would be really interesting to see conserved patterns across veery different bugs πŸ€“πŸ€“

24.09.2025 17:50 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

as a cell shape/morphology enthusiast, just saying that this is super cool doesn't do it enough justice! enhorabuena Ana and the team!

23.09.2025 21:36 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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#HappyFluorescenceFriday!

#microscopycommunity- want to learn open source image analysis or share your knowledge to help others? We’ve got a FREE virtual workshop Nov 17-19! Now accepting workshop session applications!

Learn more & sign up: buff.ly/esGIotD

19.09.2025 16:08 β€” πŸ‘ 19    πŸ” 13    πŸ’¬ 0    πŸ“Œ 1

Time to get more into OMEZarr! πŸ€“πŸ’»πŸ”¬

17.09.2025 08:53 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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a crab is crawling on a sandy beach ALT: a crab is crawling on a sandy beach

Crabs! Everything eventually becomes crab πŸ¦€πŸ¦€πŸ¦€

05.08.2025 18:29 β€” πŸ‘ 6    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

and that they have a probability of giving the wrong output

18.06.2025 17:04 β€” πŸ‘ 4    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

I think it would be very interesting to learn how bioimage analysts can insert themselves/become part of groups that are zero computational (full bench), hybrid, or full computational. What skills can they bring and also they can learn! πŸ€“πŸ”¬

12.03.2025 19:21 β€” πŸ‘ 4    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Cannot really emphasize how amazing this tool is! For me, it checks many important boxes:
- feels intuitive
- powerful
- customizable
- flexible

Many congratulations to @anwaiarchit.bsky.social , @cppape.bsky.social and the whole team! Looking forward to play with it and push its limits! πŸ˜πŸ’»

13.02.2025 19:12 β€” πŸ‘ 13    πŸ” 2    πŸ’¬ 0    πŸ“Œ 0

Absolutely beautiful work! One channel: multi structure separation? The amount of information you'll be able to extract with multiple fluorophores 🀩🀩🀩

11.02.2025 19:16 β€” πŸ‘ 4    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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three men in suits and ties are sitting at a table talking to each other . ALT: three men in suits and ties are sitting at a table talking to each other .
29.12.2024 20:47 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Hobbes maybe, but Calvin would have been gollumized in no time

25.12.2024 00:27 β€” πŸ‘ 9    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Absolutely beautiful work 😍😍 congratulations! πŸ”¬πŸ€–

17.12.2024 22:31 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Could this be a start to go the "quality not quantity" route?

17.12.2024 12:18 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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a black and white photo of a mailbox with a person standing in it . ALT: a black and white photo of a mailbox with a person standing in it .
14.12.2024 11:26 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

I was recently at a conference where they have people small adhesives joined by Velcro, so you can hang the poster but also easily get it down after the session

07.12.2024 23:47 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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New report highlights the scientific impact of open source software Two of the scientists who won this year’s Nobel Prize for cracking the code of proteins’ intricate structures relied, in part, on a series of computing

"Scientists collaborate β€” funders must, too"

@dartar.bsky.social & @k8hert.bsky.social

www.statnews.com/sponsor/2024...

04.12.2024 10:21 β€” πŸ‘ 30    πŸ” 17    πŸ’¬ 0    πŸ“Œ 2
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And the 3D projection of the neural crest and the stacks

29.11.2024 23:29 β€” πŸ‘ 4    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
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Just realized that what I intended to upload as GIF was just as an image ): So here they are first going through the Z stacks

29.11.2024 23:25 β€” πŸ‘ 9    πŸ” 2    πŸ’¬ 1    πŸ“Œ 0
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But of course, why not trying to segment the stained single cells? Cellpose3 with an amazing out of the box performance! A truly fantastic and powerful software by @computingnature.bsky.social and @marius10p.bsky.social

(masks rendered with the glasbey palette using MorphoLibJ)!

29.11.2024 20:37 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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While my main focus is bacteria (for now), for my first #FluorescenceFriday I couldn't resist posting these beautiful neural crest immunofluorescence images of an embryo, by my fellow PhD student Elio Escamilla

29.11.2024 20:34 β€” πŸ‘ 11    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

This is absolutely gorgeous 😍😍

28.11.2024 13:01 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

You're welcome! But definitely would be cool to train an LLM only on specific literatures πŸ€“

28.11.2024 09:09 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

@adileyasar.bsky.social

28.11.2024 09:04 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

A convolution of image analysts? 🧐

26.11.2024 14:43 β€” πŸ‘ 5    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Could I join even if I'm relatively new? 😁

26.11.2024 14:10 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

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