At the start of January, Johanna, @rorak.bsky.social and Sven traveled to Vancouver where Johanna presented our paper "Smaller and More Flexible Cuckoo Filters"(epubs.siam.org/doi/abs/10.1...) at the ALENEX 2026.
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03.02.2026 13:58 — 👍 5 🔁 2 💬 2 📌 0
🧬🖥️ Call for Abstracts OPEN!
Join us in celebrating 40 years of the German Conference on #Bioinformatics (#GCB2026) 🎉
📍 Saarbrücken | 🗓 22–25 Sep 2026
Submit your research & shape the future of Bioinformatics!
Deadlines
Workshops: 31 Mar 26
Talks: 3 May 26
Poster: 6 Aug 26
👉 GCB2026.DE
28.01.2026 14:34 — 👍 5 🔁 5 💬 1 📌 0
Cleanifier is a fast and memory-frugal tool to remove host contamination from microbial sequence data.
We build a pangenome gapped k-mer index using a probabilistic Cuckoo filter (
doi.org/10.48550/arX..., @Alenex 2026) for low memory requirements and fast queries.
27.11.2025 11:27 — 👍 2 🔁 0 💬 0 📌 0
Cleanifier: Contamination removal from microbial sequences using spaced seeds of a human pangenome index
AbstractMotivation. The first step when working with DNA data of human-derived microbiomes is to remove human contamination for two reasons. First, many co
We are excited that our paper "Cleanifier: Contamination removal from microbial sequences using spaced seeds of a human pangenome index" is now published at Bioinformatics (doi.org/10.1093/bioi...).
You can find it at gitlab (gitlab.com/rahmannlab/c...) or install it via PyPI or Bioconda.
27.11.2025 11:27 — 👍 12 🔁 9 💬 1 📌 0
#RECOMB2026 will be in Thessaloniki, Greece on May 26-29, 2026. Satellites on May 24-25. Save the date!
Το συνέδριο #RECOMB2026 θα πραγματοποιηθεί στη Θεσσαλονίκη, στις 26-29 Μαΐου 2026. Οι δορυφορικές εκδηλώσεις θα διεξαχθούν στις 24-25 Μαΐου 2026. Σημειώστε την ημερομηνία!
26.09.2025 15:03 — 👍 23 🔁 13 💬 0 📌 1
Snakemake
Next year in march, the 2nd #Snakemake hackathon, this time at the #TUMunich in Germany, will take place. If you are interested in participating, follow the link on snakemake.github.io and check out the details!
29.08.2025 10:46 — 👍 5 🔁 3 💬 0 📌 0
Cleanifier: A fast and lightweight k-mer based tool to remove contamination in microbial sequence data https://www.biorxiv.org/content/10.1101/2025.06.24.661305v1
27.06.2025 22:48 — 👍 5 🔁 3 💬 0 📌 1
Excited to share that our preprint, Datavzrd: Rapid programming- and maintenance-free interactive visualization and communication of tabular data, is now up on bioRxiv! 🎉 #datavzrd
08.04.2025 12:04 — 👍 0 🔁 1 💬 0 📌 0
Datavzrd: Rapid programming- and maintenance-free interactive visualization and communication of tabular data https://www.biorxiv.org/content/10.1101/2025.04.03.647146v1
08.04.2025 10:48 — 👍 2 🔁 2 💬 0 📌 1
Fellow of the Kalinina Lab at the Helmholtz Institute for Pharmaceutical Research Saarland (HIPS)
PhD candidate at Helmholtz Institute for Pharmaceutical Research Saarland
Foundational tools for omics data (mostly in python).
Open infrastructure software in the public interest.
Maintainer of utilities and libraries for time synchronization, data compression, and on privilege boundaries.
Projects: sudo-rs, ntpd-rs, statime, zlib-rs and more on trifectatech.org.
Sequence bioinfomatician, algorithms, methods.
Postdoc in Institut Pasteur in Rayan Chikhi's lab
Professor of Algorithmic and Microbial Genomics at the University of Bath (UK). Pangenomes, drug resistance (esp TB), data structures for DNA search, plasmid evolution, global microbial surveillance. Open Data, reproducibility
PhD student @ Ca' Foscari University of Venice
The 30th International Conference on Research in Computational Molecular Biology.
May 26 - 29, 2026
recomb.org
Incoming DDLS Assistant Professor, Data Science and AI
division, Chalmers University | Formerly at JHU-LangmeadLab, UNIL-DessimozLab, WUR-deRidderGroup | Pangenomics for studying genome variation and evolution | Hiring PhDs/Postdocs CGRLab.github.io
Computer Science -- Data Structures and Algorithms (cs.DS)
source: https://export.arxiv.org/rss/cs.DS
maintainer: @tmaehara.bsky.social
The German Conference on Bioinformatics (GCB) is an annual, international conference devoted to all areas of bioinformatics and meant as a platform for the whole bioinformatics community. The next GCB will take place in Saarbrücken from 22 - 25 Sep. 2026.
Research group in Lille, Fr.
Bren Professor of Computational Biology @Caltech.edu. Blog at http://liorpachter.wordpress.com. Posts represent my views, not my employer's. #methodsmatter
Assistant Professor for Data Science in Systems Biology at the Technical University of Munich (http://daisybio.de). Mostly posting about bioinformatics and systems / network biology research. Views are my own. he / him.
Father, husband, scientist, professor, martial artist, scuba diver (in about that order).
I am not a deep man, but I have many shallows. ctbrown@ucdavis.edu, http://ivory.idyll.org/blog/.
PhD student in bioinformatics w/ Karel Břinda and Pierre Peterlongo (Inria/Irisa)
🧬 Leveraging structure of bacterial genome datasets for large-scale algorithms
🌐 lacker.gitlab.io
Algorithmic Bioinformatics Researcher and Teacher. Posts about research results and educational/mentorship topics (for details, see http://bit.ly/380vX22).
