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David Pollock

@genomesevolve.bsky.social

Evolutionary and Mathematical Biology, sequence structure and function, genomes evolve, statistical theory and knowledge, empirical-theoretical interface, communication of evolutionary genetics, collaboratives, the mind-body problem, humanism

573 Followers  |  692 Following  |  433 Posts  |  Joined: 22.11.2024  |  1.9597

Latest posts by genomesevolve.bsky.social on Bluesky

Preview
Evolution of bioluminescence in Anthozoa with emphasis on Octocorallia Abstract. Bioluminescence is a widespread phenomenon that has evolved multiple times across the tree of life, converging among diverse fauna and habitat ty

Bioluminescence, phylogenetic analysis, ancestral reconstruction. This looks like a fun paper for my reading list. (credit to @evolutionsoup.bsky.social for bringing to my attention).
royalsocietypublishing.org/rspb/article...

05.12.2025 21:08 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Good advice to beginning graduate students (and others, maybe everybody):

"good writing is downstream of clear thinking and a strong understanding of the subject matter at hand."

--Jamelle Bouie @jamellebouie.net

05.12.2025 20:55 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

This is an interesting distraction driven by @jessicacalarco.com. The comment below misses the point that human-support (and art) wage rises are a lagging effect. It seems that what needs to happen is to accelerate the effect to counteract inequality. UBI perhaps? Decrease educational costs?

05.12.2025 20:48 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Putting aside comment on anything else, this claim about tautological definitions is definitively wrong. Certain processes can lead to predictable equilibria, and observation of those equilibria, esp. if otherwise rare, is evidence for the process. Puddles are predictive of past rain.

05.12.2025 20:32 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

If you can end with "this is a good world" you are doing something right.

30.11.2025 19:55 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

also liked the idea of upping "to the moon and back again". Ha! Only to the moon? to the end of the universe and back again more like it!

23.11.2025 03:12 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Very sorry that you thought I was annoyed in any way. As a rule if I am actually annoyed at something I try not to write it in a forum like this, but please believe me when I say I was just playing with the concepts. I'll review why it came off as annoyed.

23.11.2025 03:08 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 2    πŸ“Œ 0

a) many from fields who thought they were v smart found biology difficult to conquer, let alone evolution
b) you snuck "measurable" in there, changes things
c) is length of universe really measurable? Why do units have to exist as things in themselves?
d) to the end of the universe, and back again

23.11.2025 00:29 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

These two have made a difference. This prize will help them make even more of a difference.

22.11.2025 21:11 β€” πŸ‘ 35    πŸ” 11    πŸ’¬ 1    πŸ“Œ 1

I think reality is constrained by math, but I don't know that math is constrained by reality, even if it was initially inspired by reality.

23.11.2025 00:01 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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The digestive systems of carnivorous plants A comparison of the forms and functions of digestive and absorptive glands in carnivorous plants sheds light on their convergent evolution.

"The digestive systems of carnivorous plants"

This looks really cool. πŸ‘Œ Work from Matthias Freund, Dorothea Graus, Rainer Hedrich & Kenji Fukushima et al.

academic.oup.com/plphys/artic...

#PlantScience

15.09.2023 18:04 β€” πŸ‘ 4    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
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Language models reveal a complex sequence basis for adaptive convergent evolution of protein functions | PNAS Convergent evolution, or convergence, refers to repeated, independent emergences of the same trait in two or more lineages of species during evolut...

recent protein language models can extract embeddings from protein sequences reflecting high-order features, developed statistical tests to evaluate the adaptive convergence of such features.

Interested to see how people will use this (I edited it, not an author).

www.pnas.org/doi/10.1073/...

21.11.2025 03:40 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Maybe could put together for a Vanillerie Research Institute?

21.11.2025 03:37 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

"I'm not the bubble, you're the bubble"

19.11.2025 15:13 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

My own mother used to say "come home with your shield or on it", but I don't think I could have put up with that level of snark from a teddy bear.

17.11.2025 15:45 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

But can you evidence that for me?

17.11.2025 15:24 β€” πŸ‘ 0    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

I may be going to hell in a bucket, babe
But at least I'm enjoying the ride

14.11.2025 22:55 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0
Job Opening **ASSISTANT PROFESSOR MARINE ECOLOGY**, Department of Biological Sciences, University of Rhode Island.

The Department of Biological Sciences in the College of the Environment and Life Sciences (CELS) at the University of Rhode Island (URI) invites applications for an academic year (9 month), tenure-track Assistant Professor position specializing in Marine Ecology. URI, the top public university in New England, is a land and sea grant research university located in Kingston, Rhode Island, a beautiful seaside community that is well connected by car, bus, and rail about 40 min from Providence, an hour from Boston and 3 hours from New York City.

Job Opening **ASSISTANT PROFESSOR MARINE ECOLOGY**, Department of Biological Sciences, University of Rhode Island. The Department of Biological Sciences in the College of the Environment and Life Sciences (CELS) at the University of Rhode Island (URI) invites applications for an academic year (9 month), tenure-track Assistant Professor position specializing in Marine Ecology. URI, the top public university in New England, is a land and sea grant research university located in Kingston, Rhode Island, a beautiful seaside community that is well connected by car, bus, and rail about 40 min from Providence, an hour from Boston and 3 hours from New York City.

Job Opening **ASSISTANT PROFESSOR MARINE ECOLOGY**, Department of Biological Sciences, University of Rhode Island.

jobs.uri.edu/postings/15960

10.11.2025 16:03 β€” πŸ‘ 50    πŸ” 74    πŸ’¬ 2    πŸ“Œ 3
Apply - Interfolio {{$ctrl.$state.data.pageTitle}} - Apply - Interfolio

My department at UT Austin is looking to hire an Assistant Professor in Evolutionary Biology, broadly defined. Feel free to reach out to me with any questions you may have.
apply.interfolio.com/177547

13.11.2025 15:23 β€” πŸ‘ 46    πŸ” 71    πŸ’¬ 1    πŸ“Œ 1

Congratulations Joe!

14.11.2025 17:47 β€” πŸ‘ 9    πŸ” 0    πŸ’¬ 0    πŸ“Œ 0

Happy to share Jialin's first publication. She did a great job exploring the transition to land in animals. Co-supervised by the great Jordi Paps and me and in collaboration with Davide Pisani and @phil-donoghue.bsky.social

13.11.2025 15:18 β€” πŸ‘ 63    πŸ” 34    πŸ’¬ 2    πŸ“Œ 3

This is truly inconceivable. In future, let's restrict to lively debate in Scandinavian journals.

11.11.2025 20:04 β€” πŸ‘ 2    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Super piece.

09.11.2025 17:49 β€” πŸ‘ 0    πŸ” 1    πŸ’¬ 0    πŸ“Œ 0
Director, Center for Pathogen Bioinformatics The Centre for Pathogen Bioinformatics (CPB) is a unit of SIB which offers expertise and services in pathogen bioinformatics, computational molecular epidemiology and related multi-site project manage...

Open position at the Swiss Institute of Bioinformatics:
We are looking for a Director of the Center of Pathogen Bioinformatics
apply.refline.ch/499599/0346/...
I am in the Center's steering board together with fantastic colleagues (Emma Hodcroft @firefoxx66.bsky.social, Richard Neher @neher.io, and

25.10.2025 13:03 β€” πŸ‘ 21    πŸ” 34    πŸ’¬ 1    πŸ“Œ 0

we are almost there with doughnation (the giving of baked products) to donation, so...

07.11.2025 16:33 β€” πŸ‘ 3    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0
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πŸ“’ Open Call! The Max Perutz Labs invite applications for a Tenure-Track Professorship in Genome Biology. We are particularly interested in researchers investigating theΒ molecular and biophysical mechanisms underlying genome function and regulation. More details ➑️ tinyurl.com/3t7vvdct

05.11.2025 10:58 β€” πŸ‘ 31    πŸ” 35    πŸ’¬ 0    πŸ“Œ 1
Text: Society for the Study of Evolution Small Grants for Local and Regional Outreach, Deadline: March 2.

Text: Society for the Study of Evolution Small Grants for Local and Regional Outreach, Deadline: March 2.

Now accepting proposals for the Small Grants for Local and Regional Outreach, which provide up to $1000 USD for a variety of evolution education & outreach projects, workshops, and events. Submit your proposal by March 2, 2026! shorturl.at/I8HqO

06.11.2025 08:22 β€” πŸ‘ 7    πŸ” 4    πŸ’¬ 0    πŸ“Œ 0

Interessant, hier würde man Sie zuerst Vyvgaart ausprobieren lassen. Ganz im Gegenteil: Komplementinhibitoren sind das Einzige, was nachweislich wirklich hilft. (Ich hoffe, die Übersetzung ist nicht allzu schlecht.)

06.11.2025 18:07 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

Viel GlΓΌck und ich hoffe, dass es nicht zu schnell nachlΓ€sst.

06.11.2025 17:43 β€” πŸ‘ 1    πŸ” 0    πŸ’¬ 1    πŸ“Œ 0

I'm super stoked that Colorado voted to fund free meals for kids for schools.

(I've been saying lunches, but the program includes breakfasts, too.)

05.11.2025 04:23 β€” πŸ‘ 1372    πŸ” 158    πŸ’¬ 15    πŸ“Œ 4

@genomesevolve is following 20 prominent accounts