@axlmsg.bsky.social
Computational Life Scientist.
π Switching to Zen browser (vertical tabs+different contexts) was a life changing experience for me and reduced my open tab count by at least 80%
13.01.2026 18:26 β π 1 π 0 π¬ 2 π 0Everyone should watch this
06.10.2025 12:47 β π 15 π 8 π¬ 2 π 0In this sense, "putting on the evolutionary pair of glasses" is nothing else but to account for the inevitable theory-ladenness of observation. There seems in fact no good reason to assume why machine learning should be exempt from theory-ladenness, which is one way to read the NFL theorems.
14.09.2025 13:50 β π 0 π 0 π¬ 0 π 0A #philscy perspective on our work: As machine learning is underdetermined (following the no-free-lunch theorems), the training process has little chance to infer an internal representation that is phylogenetically plausible - unless we introduce explicit inductive bias.
14.09.2025 13:45 β π 0 π 0 π¬ 1 π 0...in particular, we can consider the splits diagrams of all quartets of taxa and train the neural network so that the splits diagrams for all quartets degenerate to trees.
14.09.2025 13:40 β π 0 π 0 π¬ 0 π 0If we pass a (knwon and well-established) phylogenetic tree to the training process of the neural network, we can utilize mathematical structures behind evolutionary distances...
14.09.2025 13:39 β π 0 π 0 π¬ 1 π 0As has been observed by other authors before, the internal representations of neural networks are usually incompatible with known phylogenies. So, how could a neural network learn to infer features that are evolutionarily plausible?
14.09.2025 13:37 β π 1 π 0 π¬ 1 π 0Link to the full paper: www.sciencedirect.com/science/arti...
14.09.2025 13:32 β π 0 π 0 π¬ 0 π 0We found AI to be a bit short-sighted towards evolution, so we went out to grind some computational lenses. The resulting pair of evolutionary glasses is finally available in the latest issue of CSBJ
news.rub.de/english/pres...
Sieht sehr bΓΆhmisch aus!
14.09.2025 13:23 β π 1 π 0 π¬ 1 π 0New post about Lysenko and Bhattacharya from @angierasmussen.bsky.social
open.substack.com/pub/rasmusse...
In Henk de Regtβs book on Understanding Scientific Understanding, skill takes center stage for understanding as a primary goal of science.
13.08.2025 19:25 β π 2 π 0 π¬ 1 π 0"Science in the US is entering a phase resembling the Lysenko era in the Soviet Union."
www.theguardian.com/commentisfre...
Almost like it was written for the world these days... the "Final Speech" by Charly Chaplin's hairdresser and dictator-by-coincidence Hynkel. youtu.be/J7GY1Xg6X20?...
16.03.2025 17:02 β π 0 π 0 π¬ 0 π 0Large Language Model is Secretly a Protein Sequence Optimizer
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Large Language Model is Secretly a Protein Sequence Optimizer [new]
LLMs, surprisingly, can optimize protein sequences via directed evolution, even without explicit protein training data, finding high fitness variants.
I donated. It would be great to have a social-media protocol that wasn't subject to capture, and it does seem possible.
freeourfeeds.com
β¦and most importantly: Calculators could actually *do* arithmetic, and did not imitate the process of doing arithmetic.
12.01.2025 14:14 β π 0 π 0 π¬ 0 π 0There is also the "classical" paper by Zech et al. which identifies potential shortcuts in pneumonia detection (see e.g. Fig. 2)
journals.plos.org/plosmedicine...
AI predicts beer consumption from knee x-rays www.nature.com/articles/s41...
05.01.2025 18:52 β π 1 π 0 π¬ 1 π 0"Researchers trained medical AI models on over 25,000 knee X-rays. They then essentially worked backwards, tasking the deep learning programs to find commonalities that predicted nonsensical traits, such as which knee-owners clearly drank beer or ate refried beansβwhich is patently absurd."
12.12.2024 18:50 β π 120 π 49 π¬ 6 π 8cdn.bsky.app/img/feed_thu...
Here's what we've been missing in the meantime. Better tell the owner of the "Hammer of Justice" not to hit his own thumb.
Meanwhile, in the less free corners of the internetβ¦
18.11.2024 17:00 β π 1 π 0 π¬ 0 π 0