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Michael Doube

@mdoube.bsky.social

Pixel herder

340 Followers  |  644 Following  |  163 Posts  |  Joined: 18.11.2024  |  1.7641

Latest posts by mdoube.bsky.social on Bluesky

IMAGE SHOWS GRAPHIC OF CORNELL LAB OF ORNITHOLOGY PHYLOGENY EXPLORER TOOL.

IMAGE SHOWS GRAPHIC OF CORNELL LAB OF ORNITHOLOGY PHYLOGENY EXPLORER TOOL.

MAJOR NEWS! We just launched an awesome new tool! The illustrated Birds of the World Phylogeny Explorer lets users trace any birdโ€™s lineage, compare species relationships, and explore major evolutionary milestones with a click of a button. SHARE and EXPLORE! birdsoftheworld.org/bow/news/phy...

27.01.2026 01:26 โ€” ๐Ÿ‘ 409    ๐Ÿ” 168    ๐Ÿ’ฌ 8    ๐Ÿ“Œ 31

Yes and no. We focus on MDPI-Frontiers because if you drew a random SI you'd have a 70%+ chance of it being from them.
But we also highlight that across all SIs at BMC, Springer, Roy Soc there's *similar* amounts of PISS.
Delegating trust to guest editors has costs & should be done responsibly.

26.01.2026 08:13 โ€” ๐Ÿ‘ 0    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

One of the "exciting" things about GPU development is all the funny quirks that hardware vendors come up with that keep life interesting. Wrt. OpenCL support AMD is the most compliant and predictable; NVIDIA is mostly OK but a bit odd sometimes; Intel lacks useful things for science like FP64.

07.01.2026 20:01 โ€” ๐Ÿ‘ 2    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Swiss Breeding Bird Monitoring dataset is now openly accessible! The team from @vogelwarte.bsky.social made the long-term dataset of the Swiss CBM program (โ€œMonitoring Hรคufige Brutvรถgelโ€, MHB) freely available under CC-BY 4.0 licence. esajournals.onlinelibrary.wiley.com/doi/10.1002/...

30.12.2025 18:03 โ€” ๐Ÿ‘ 12    ๐Ÿ” 11    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

It's a dumpster fire of poor UX for editors and reviewers.
I don't know why any publishers are still using this system. They did try to implement ORCiD login but it only worked for the first journal's account you used it on.

02.01.2026 21:30 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

The banality of evil.

26.12.2025 05:31 โ€” ๐Ÿ‘ 417    ๐Ÿ” 98    ๐Ÿ’ฌ 11    ๐Ÿ“Œ 0
A promotional graphic for an online event titled โ€œMeet the Editor โ€“ BiO.โ€ The background is light blue with white accents. At the top, bold text reads โ€œMeet the Editor โ€“ BiO.โ€ Below, smaller text states โ€œTuesday 9 December.โ€ The design includes a circular photo placeholder on the left and a logo on the right.

A promotional graphic for an online event titled โ€œMeet the Editor โ€“ BiO.โ€ The background is light blue with white accents. At the top, bold text reads โ€œMeet the Editor โ€“ BiO.โ€ Below, smaller text states โ€œTuesday 9 December.โ€ The design includes a circular photo placeholder on the left and a logo on the right.

Attending #CellBio2025? Have questions about publishing with Biology Open @biologyopen.bsky.social or our Fast & Fair peer review initiative? Meet Editor-in-Chief @danielgorelick.bsky.social on Tuesday, 9 December, 12:00 -13:00 pm at booth 1232.

08.12.2025 15:03 โ€” ๐Ÿ‘ 4    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

The licence you put on your work needs to sustain your ability to continue it. Otherwise it's self-defeating and you'll be taken advantage of.

08.12.2025 06:45 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Final pdf is out! journals.biologists.com/jeb/article/...

01.12.2025 06:50 โ€” ๐Ÿ‘ 6    ๐Ÿ” 4    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Toward better 2D - 3D registration in BigWarp BigWarp has so far focused on 2D-2D or 3D-3D registration, and not on 2D-3D registration. After a conversation with @Christian_Tischer , we thought some simple UI changes could make the support for 2...

Do you have 2D-to-3D image registration challenges? Let me know about them here
forum.image.sc/t/toward-bet...

29.11.2025 18:03 โ€” ๐Ÿ‘ 20    ๐Ÿ” 11    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
bonej.org

๐Ÿ“ข New release!

This one makes BoneJ's GPU-accelerated extensions easier to access from Python by using ImageJ2 / scijava-style wrappers.

Just let the Fiji updater run and grab a voucher from bonej.org/shop

27.11.2025 19:29 โ€” ๐Ÿ‘ 1    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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BIOIMAGE ANALYSTS ASSEMBLE!!!

#CBIAS2025

25.11.2025 13:05 โ€” ๐Ÿ‘ 54    ๐Ÿ” 17    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 6
Preview
London ๐Ÿ‡ฌ๐Ÿ‡ง Playlist - London ๐Ÿ‡ฌ๐Ÿ‡ง - 37 items

Looking forward to catch up with @cbias.bsky.social next week, and reconnect with the old London crew. See you there!
tidal.com/playlist/d9d...

22.11.2025 10:55 โ€” ๐Ÿ‘ 1    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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We just released a new major version of TrackMate (v8), the cell and organelle tracking plugin of Fiji.

It ships many new features, detailed below, but that are articulated around the following:

20.11.2025 11:42 โ€” ๐Ÿ‘ 182    ๐Ÿ” 76    ๐Ÿ’ฌ 4    ๐Ÿ“Œ 7
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We're pleased to announce that our latest release of new and updated UK Biobank data is now available to approved researchers around the world โœ…

20.11.2025 09:08 โ€” ๐Ÿ‘ 9    ๐Ÿ” 4    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 1

Python notebook from a two year old paper:
Oh, no, I cannot run, there is a slight mismatch of a logging library.

ImageJ plugin from 2001 running on Quantum Java 51 in 2078:
Your 100 petabyte temporal hologram was successfully thresholded.

20.11.2025 17:42 โ€” ๐Ÿ‘ 44    ๐Ÿ” 6    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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When you think of bats, you probably donโ€™t think of pollination - but bats are crucial pollinators, and the key to creating a certain drink! ๐Ÿธ

See an (adorable) bat covered in pollen and learn why a world without bats would be a world without tequila in this weekโ€™s Surprising Science. ๐Ÿฆ‡

17.11.2025 15:09 โ€” ๐Ÿ‘ 42    ๐Ÿ” 13    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 3
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Philippe Taquet, chasseur de dinosaures et ancien directeur du Musรฉum national dโ€™histoire naturelle, est mort Destinรฉ ร  reprendre lโ€™industrie textile familiale, cet esprit libre a prรฉfรฉrรฉ la vie de chercheur dโ€™os, dรฉcouvrant plusieurs espรจces dโ€™animaux disparus, tout en menant une carriรจre institutionnelle de premier plan. Il sโ€™est รฉteint le 16ย novembre, ร  85ย ans.

Philippe Taquet, chasseur de dinosaures et ancien directeur du Musรฉum national dโ€™histoire naturelle, est mort

17.11.2025 10:55 โ€” ๐Ÿ‘ 29    ๐Ÿ” 21    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 12

Remember that survey about how we can sustain napari development? We extended the deadline until the 16th, AoE! Blog post: napari.org/island-dispa...
Survey: napari.typeform.com/sustainability
If you use napari at all we would be super grateful if you filled it in! ๐Ÿ™

10.11.2025 13:23 โ€” ๐Ÿ‘ 4    ๐Ÿ” 4    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Weโ€™re switching our eight subscription journals to a #SubscribetoOpen model for 2026. Royal Society Publishing Director, Rod Cookson, explains why and how. royalsociety.org/blog/2025/11... #OpenAccess #S2O

10.11.2025 20:01 โ€” ๐Ÿ‘ 2    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

My teenage kids just discovered and love (OK I introduced them to) the Bloodhound Gang ๐Ÿ˜ฌ

But on the plus side, Cibo Matto is also popular ๐Ÿคทโ€โ™‚๏ธ

08.11.2025 11:08 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Preview
TIDAL - High Fidelity Music Streaming TIDAL is the first global music streaming service with high fidelity sound, hi-def video quality, along with expertly curated playlists and original content โ€” making it a trusted source for music and ...

ร€ propos de

- absolutely nothing -

Here's my " I โค๏ธ NY " playlist

tidal.com/playlist/0e5...

05.11.2025 14:42 โ€” ๐Ÿ‘ 3    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Join me for a tutorial on @bonej.org 17 November 13h00 CET

03.11.2025 23:00 โ€” ๐Ÿ‘ 1    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Do you want to learn more about 25+ bioimage analysis tools, 100% for free? Sign up to attend Halfway to I2K today! tinyurl.com/Halfway-to-I...
Wishing you'd submitted a tool or workshop but missed the deadline? GREAT NEWS, we just extended one week! Submit by Friday - airtable.com/app2zpB8d82r...

03.11.2025 22:04 โ€” ๐Ÿ‘ 11    ๐Ÿ” 10    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 1
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Guess who's back! ๐Ÿฆ‡

55 years missing: An international team led by the museum rediscovered the Turkestan long-eared bat in the Karakum Desert. Endemic species like ๐˜—๐˜ญ๐˜ฆ๐˜ค๐˜ฐ๐˜ต๐˜ถ๐˜ด ๐˜ต๐˜ถ๐˜ณ๐˜ฌ๐˜ฎ๐˜ฆ๐˜ฏ๐˜ช๐˜ค๐˜ถ๐˜ด reveal how life adapts โ€“ and why protecting unique habitats matters. ๐ŸŒ

๐Ÿ“น Christian Dietz
#biodiversity #bats

03.11.2025 18:23 โ€” ๐Ÿ‘ 121    ๐Ÿ” 37    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 8
Scanning electron micrograph of a silver-doped porous micro-arc oxide layer on titanium  - Copyright ยฉ Fraunhofer IFAM

Scanning electron micrograph of a silver-doped porous micro-arc oxide layer on titanium - Copyright ยฉ Fraunhofer IFAM

Innovative Surfaces to Rapidly Load Bone Implants with Antibiotics
Infectious complications are not uncommon after implant placement. The risk is higher in heavily contaminated wounds, which are particularly common in war zones such as Ukraine, ...
weiterlesen

03.11.2025 10:41 โ€” ๐Ÿ‘ 0    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Wasn't there a job opening at your gaff @jytinevez.bsky.social ...?

31.10.2025 21:32 โ€” ๐Ÿ‘ 0    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Gutted to be missing this. Attending in spirit as a head shot staring out at you from this poster!

30.10.2025 11:37 โ€” ๐Ÿ‘ 4    ๐Ÿ” 0    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

Come and join our team ๐Ÿฅฐ

11.10.2025 08:54 โ€” ๐Ÿ‘ 7    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0

@mdoube is following 19 prominent accounts