Matthijs Pals

Finally got the job ad—looking for 2 PhD students to start spring next year:

www.gao-unit.com/join-us/

If comp neuro, ML, and AI4Neuro is your thing, or you just nerd out over brain recordings, apply!

I'm at neurips. DM me here / on the conference app or email if you want to meet 🏖️🌮

We are looking for a Research Engineer (E13 TV-L) to work at the intersection of #ML and #compneuro! 🤖🧠

Help us build large-scale bio-inspired neural networks, write high-quality research code, and contribute to open-source tools like jaxley, sbi, and flyvis 🪰.

More info: www.mackelab.org/jobs/

MackeLab has grown! 🎉 Warm welcome to 5(!) brilliant and fun new PhD students / research scientists who joined our lab in the past year — we can’t wait to do great science and already have good times together! 🤖🧠 Meet them in the thread 👇 1/7

Jaxley: differentiable simulation enables large-scale training of detailed biophysical models of neural dynamics - Nature Methods Jaxley is a versatile platform for biophysical modeling in neuroscience. It allows efficiently simulating large-scale biophysical models on CPUs, GPUs and TPUs. Model parameters can be optimized with ...

I am super happy to share that our project on training biophysical models with Jaxley is now published in Nature Methods: www.nature.com/articles/s41...

Jaxley: differentiable simulation enables large-scale training of detailed biophysical models of neural dynamics - Nature Methods Jaxley is a versatile platform for biophysical modeling in neuroscience. It allows efficiently simulating large-scale biophysical models on CPUs, GPUs and TPUs. Model parameters can be optimized with ...

Our work on training biophysical models with Jaxley is now out in @natmethods.nature.com. Led by @deismic.bsky.social, with @philipp.hertie.ai, @ppjgoncalves.bsky.social & @jakhmack.bsky.social et al.

Paper: www.nature.com/articles/s41...

Really cool work! 🔥

The Macke lab is well-represented at the @bernsteinneuro.bsky.social conference in Frankfurt this year! We have lots of exciting new work to present with 7 posters (details👇) 1/9

a man wearing a white shirt and tie smiles in front of a window ALT: a man wearing a white shirt and tie smiles in front of a window

I've been waiting some years to make this joke and now it’s real:

I conned somebody into giving me a faculty job!

I’m starting as a W1 Tenure-Track Professor at Goethe University Frankfurt in a week (lol), in the Faculty of CS and Math

and I'm recruiting PhD students 🤗

Our #AI #DynamicalSystems #FoundationModel DynaMix was accepted to #NeurIPS2025 with outstanding reviews (6555) – first model which can *zero-shot*, w/o any fine-tuning, forecast the *long-term statistics* of time series provided a context. Test it on #HuggingFace:
huggingface.co/spaces/Durst...

From hackathon to release: sbi v0.25 is here! 🎉

What happens when dozens of SBI researchers and practitioners collaborate for a week? New inference methods, new documentation, lots of new embedding networks, a bridge to pyro and a bridge between flow matching and score-based methods 🤯

1/7 🧵

Got prov. approval for 2 major grants in Neuro-AI & Dynamical Systems Reconstruction, on learning & inference in non-stationary environments, out-of-domain generalization, and DS foundation models. To all AI/math/DS enthusiasts: Expect job announcements (PhD/PostDoc) soon! Feel free to get in touch.

Jelmer Borst and I are looking for a PhD candidate to build an EEG-based model of human working memory! This is a really cool project that I've wanted to kick off for a while, and I can't wait to see it happen. Please share and I'm happy to answer any Qs about the project!
www.rug.nl/about-ug/wor...

Null and Noteworthy: Neurons tracking sequences don’t fire in order Instead, neurons encode the position of sequential items in working memory based on when they fire during ongoing brain wave oscillations—a finding that challenges a long-standing theory.

The neurons that encode sequential information into working memory do not fire in that same order during recall, a finding that is at odds with a long-standing theory. Read more in this month’s Null and Noteworthy.

By @ldattaro.bsky.social

#neuroskyence

www.thetransmitter.org/null-and-not...

Abstract rule learning promotes cognitive flexibility in complex environments across species Nature Communications - Whether neurocomputational mechanisms that speed up human learning in changing environments also exist in other species remains unclear. Here, the authors show that both...

How do animals learn new rules? By systematically testing diff. behavioral strategies, guided by selective attn. to rule-relevant cues: rdcu.be/etlRV
Akin to in-context learning in AI, strategy selection depends on the animals' "training set" (prior experience), with similar repr. in rats & humans.

Out today in @nature.com: we show that individual neurons have diverse tuning to a decision variable computed by the entire population, revealing a unifying geometric principle for the encoding of sensory and dynamic cognitive variables.
www.nature.com/articles/s41...

Our new preprint 👀

Memory by a thousand rules: Automated discovery of functional multi-type plasticity rules reveals variety & degeneracy at the heart of learning Synaptic plasticity is the basis of learning and memory, but the link between synaptic changes and neural function remains elusive. Here, we used automated search algorithms to obtain thousands of str...

We just pushed “Memory by a 1000 rules” onto bioRxiv, where we use clever #ML to find #plasticity quadruplets (EE, EI, IE, II) that learn basic stability in spiking nets. Why is it cool? We find 1000s!! of solutions, and they don’t just stabilise. They #memorise! www.biorxiv.org/content/10.1...

A wide shot of approximately 30 individuals standing in a line, posing for a group photograph outdoors. The background shows a clear blue sky, trees, and a distant cityscape or hills.

Great news! Our March SBI hackathon in Tübingen was a huge success, with 40+ participants (30 onsite!). Expect significant updates soon: awesome new features & a revamped documentation you'll love! Huge thanks to our amazing SBI community! Release details coming soon. 🥁 🎉

Please RT🙏

Reach out if you want to help understand cognition by modelling, analyzing and/or collect large scale intracortical data from 👩🐒🐁

We're a friendly, diverse group (n>25) w/ this terrace 😎 in the center of Paris! See👇 for + info about the lab

We have funding to support your application!

🎓Hiring now! 🧠 Join us at the exciting intersection of ML and Neuroscience! #AI4science
We’re looking for PhDs, Postdocs and Scientific Programmers that want to use deep learning to build, optimize and study mechanistic models of neural computations. Full details: www.mackelab.org/jobs/ 1/5

Re-posting is appreciated: We have a fully funded PhD position in CMC lab @cmc-lab.bsky.social (at @tudresden_de). You can use forms.gle/qiAv5NZ871kv... to send your application and find more information. Deadline is April 30. Find more about CMC lab: cmclab.org and email me if you have questions.

Compositional simulation-based inference for time series Amortized simulation-based inference (SBI) methods train neural networks on simulated data to perform Bayesian inference. While this strategy avoids the need for tractable likelihoods, it often requir...

Excited to present our work on compositional SBI for time series at #ICLR2025 tomorrow!

If you're interested in simulation-based inference for time series, come chat with Manuel Gloeckler or Shoji Toyota

at Poster #420, Saturday 10:00–12:00 in Hall 3.

📰: arxiv.org/abs/2411.02728

Excited to announce that our paper on "Comparing noisy neural population dynamics using optimal transport distances" has been selected for an oral presentation in #ICLR2025 (1.8% top papers). Check the thread for paper details (0/n).

Presentation info: iclr.cc/virtual/2025....

Happening tomorrow morning :).

The @mackelab.bsky.social is represented at @cosynemeeting.bsky.social #cosyne2025 in Montreal

with 3 posters, 2 workshop talks, and a main conference contributed talk (for the very first time in Mackelab history 🎉)!

Out now 'in print'--- a true labor of love, in more ways than one. See the paper and press-release below!

Also, go and see @matthijspals.bsky.social's talk at #Cosyne, where he will talk about related/follow up work!

uni-tuebingen.de/en/research/...

Our study on sequence working memory using human spiking data and RNNs, is finally published :). Check it out! 👇

In the physical world, almost all information is transmitted through traveling waves -- why should it be any different in your neural network?

Super excited to share recent work with the brilliant @mozesjacobs.bsky.social: "Traveling Waves Integrate Spatial Information Through Time"

1/14

Together with @dendritesgr.bsky.social, we’ll be hosting a tutorial on constructing and optimizing biophysical models (via Jaxley & DendroTweaks) 🚀

Join us in Florence if you like dendrites, biophysics, or optimization!

1) Some exciting science in turbulent times:

How do mice distinguish self-generated vs. object-generated looming stimuli? Our new study combines VR and neural recordings from superior colliculus (SC) 🧠🐭 to explore this question.

Check out our preprint doi.org/10.1101/2024... 🧵