This work was led by @diegofe94.bsky.social , and supervised by Jose Liñares and @cafernandezlo.bsky.social
19.05.2025 08:48 — 👍 1 🔁 0 💬 0 📌 0
To align platforms, we tested Batch Effect Removal (BER) methods.
✅ Good: Limma & FAbatch reduce platform noise while preserving disease signal
⚠️ Caution: Some (e.g., Combat w/ ref) may overfit & distort biology
No universal method yet—but promising paths ahead!
#Microbiome #Bioinformatics 👇
19.05.2025 08:48 — 👍 2 🔁 0 💬 1 📌 0
🧬 We benchmarked taxonomic merging strategies using a colorectal cancer dataset (740 patients).
Using GreenGenes2, a unified DB, we saw:
• 2× more genera
• 3× more species
• Higher taxa retention than other approaches
GG2 boosts overlap between 16S & WGS data.
📊👇
19.05.2025 08:48 — 👍 2 🔁 0 💬 1 📌 0
We´re happy to share a new conference paper from the #MALL lab!
We explore integrating microbiome data from 16S rRNA & Whole Genome Shotgun across platforms. Can we combine them meaningfully despite their differences?
Lecture Notes in Computer Science from #CIBB2024.
📖 doi.org/10.1007/978-...
🧵👇
19.05.2025 08:48 — 👍 6 🔁 2 💬 2 📌 1
Download our database of 492 (!) funding opportunities for EARLY-CAREER FACULTY AND RESEARCHERS.
For each entry, we provide link to funder, description, amount, deadline, and eligibility criteria (e.g. citizenship).
Download freely here: research.jhu.edu/rdt/funding-...
17.11.2024 16:38 — 👍 561 🔁 333 💬 12 📌 13
a man is standing in front of a sphere with the words science written on it .
ALT: a man is standing in front of a sphere with the words science written on it .
🧪 Science Feeds 🧪
A list of ~240 BlueSky science feeds and their hashtags!
docs.google.com/spreadsheets...
#AcademicSky #PhDSky
11.01.2025 17:09 — 👍 74 🔁 29 💬 4 📌 3
This meme picture made me laugh... #NextFlow #CWL #SnakeMake #Galaxy
13.01.2025 17:07 — 👍 19 🔁 3 💬 1 📌 0
Knowing how to give a good talk is a crucial skill to have, but it's mostly not formally taught very well. Here's my strategy for how to prepare for the presentation, actually present it, and then answer the questions.
29.12.2024 04:45 — 👍 106 🔁 22 💬 2 📌 4
Mad Scientist
AI Nerd
Ph.D. (Pretty Huge Disaster)
Doctorando FPU en #Ciberseguridad en RNASA-IMEDIR y CITIC
(en) FPU Ph.D. candidate in #Cybersecurity at RNASA-IMEDIR and CITIC
https://rubenpjove.com
EMBL's European Bioinformatics Institute (EMBL-EBI) provides open biological data resources and tools, and performs basic research in computational biology. https://www.ebi.ac.uk/
The European Molecular Biology Laboratory drives visionary basic research and technology development in the life sciences. www.embl.org
Agencia Estatal de Investigación de España. Fomentamos la investigación científica y técnica mediante la asignación de los recursos públicos.
social psychology ▪︎ metascience ▪︎ philosophy of science ▪︎ higher education
Professor at Durham University, UK. He/him.
Website: https://sites.google.com/site/markrubinsocialpsychresearch/
Substack: https://markrubin.substack.com/
Presidential Associate Professor @upenn.edu - using AI to reimagine antibiotic discovery and peptide design. Previously @MIT, @UBC
🔗 https://delafuentelab.seas.upenn.edu
Advancing education, research, and innovation in hematology & oncology. #CancerPrevention #CancerAwareness #CancerSurvivors #CancerCare #HealthEquity #GlobalOncology #GlobalHealth #LGBTQ+🏳️🌈💙
Follow Us: https://buff.ly/MWm1IOU
Frist Parsian Hakham
Hakhmaneshian kingdom
#parsiangulfforever🔥💙🔥💙🤍🖤⚔️
I study how mutations come about. Based at @columbiauniversity.bsky.social, previously at @normalesup.bsky.social
BlueskyStarterPack.com
Made by @il.ly
British Society for Immunology. Keep up to date with news, views and more in #immunology
Email: bsi@immunology.org
The Alliance of Genome Resources supports biological science via data integration, standardization of data models and interfaces, and unified outreach.
Find us at https://www.alliancegenome.org.
GBE publishes leading original research at the interface between evolutionary biology and genomics.
🔗 academic.oup.com/gbe
🏠 @official-smbe.bsky.social
🤝 @molbioevol.bsky.social
#genome #evolution #science #biology #societyjournal
A leading peer-reviewed genomics journal. https://genome.cshlp.org
Submit: http://submit.genome.org
Molecular Biologist | Epigenetics and Adaptation | Postdoctoral Research Fellow at the University of Cambridge | Branco Weiss Fellow | sitotg.com
Head of Cancer computational biology group @ VHIO
Stanford & UoBristol postdoc, UDC PhD. Repunantiño
Head of Machine Learning in Life Sciences Laboratory. Associate professor at University of A Coruña #MALL Lab
Professor @ox.ac.uk
We use zebrafish to study how cancer starts and spreads.