@diegofe94.bsky.social
| Bioinformatician | Data scientist | PhD Student at MALL Lab (UDC) |
This work was led by @diegofe94.bsky.social , and supervised by Jose Liñares and @cafernandezlo.bsky.social
19.05.2025 08:48 — 👍 1 🔁 0 💬 0 📌 0
To align platforms, we tested Batch Effect Removal (BER) methods.
✅ Good: Limma & FAbatch reduce platform noise while preserving disease signal
⚠️ Caution: Some (e.g., Combat w/ ref) may overfit & distort biology
No universal method yet—but promising paths ahead!
#Microbiome #Bioinformatics 👇
🧬 We benchmarked taxonomic merging strategies using a colorectal cancer dataset (740 patients).
Using GreenGenes2, a unified DB, we saw:
• 2× more genera
• 3× more species
• Higher taxa retention than other approaches
GG2 boosts overlap between 16S & WGS data.
📊👇
We´re happy to share a new conference paper from the #MALL lab!
We explore integrating microbiome data from 16S rRNA & Whole Genome Shotgun across platforms. Can we combine them meaningfully despite their differences?
Lecture Notes in Computer Science from #CIBB2024.
📖 doi.org/10.1007/978-...
🧵👇
Download our database of 492 (!) funding opportunities for EARLY-CAREER FACULTY AND RESEARCHERS.
For each entry, we provide link to funder, description, amount, deadline, and eligibility criteria (e.g. citizenship).
Download freely here: research.jhu.edu/rdt/funding-...
🧪 Science Feeds 🧪
A list of ~240 BlueSky science feeds and their hashtags!
docs.google.com/spreadsheets...
#AcademicSky #PhDSky
This meme picture made me laugh... #NextFlow #CWL #SnakeMake #Galaxy
13.01.2025 17:07 — 👍 19 🔁 3 💬 1 📌 0
Knowing how to give a good talk is a crucial skill to have, but it's mostly not formally taught very well. Here's my strategy for how to prepare for the presentation, actually present it, and then answer the questions.
29.12.2024 04:45 — 👍 106 🔁 22 💬 2 📌 4
