@cfusterbarcelo.bsky.social
Post-doctoral researcher at BioVision Center, UZH || BioImage Data Scientist || Based in 📍Zurich || Born in Mallorca 🌊||
Very happy to share some more pics! What an amazing week! I am still recovering!
Thank you so much to you all❤️🩹🥲
More amazing organisers & helpers!
@tischi.bsky.social @vladimirulman.bsky.social @normanrz.com @perlman.bsky.social @virginieuhlmann.bsky.social @lorenzocerrone.bsky.social @cfusterbarcelo.bsky.social & Valentina Marcelli
(13/14 🧵)
Discussions in the documentation group
Kiya presenting the documentation goals
Kiya presenting the documentation group outcomes
A major refresh of the OME-NGFF website (ngff.openmicroscopy.org), making it clearer, more accessible, and easier to navigate
(5/14 🧵)
Hackathon participants group picture
We had an amazing OME-NGFF hackathon last week, Wednesday to Friday, following the inspiring OME-NGFF symposium. What a fantastic week! It’s hard to describe how motivating it is to be surrounded by so many talented, curious & friendly people who care deeply about open, FAIR bioimaging data.
1/14 🧵
We wrapped up the symposium part of our 2025 International OME-NGFF workshop on Tuesday. What a phenomenal two days! I'm humbled by the incredible positive energy, talent, and enthusiasm that filled this event.
13.11.2025 17:08 — 👍 25 🔁 10 💬 1 📌 2
Had an amazing week in Saarbrücken at 🧫 Cell Physics 2025, @uni-saarland.de. Visiting some old friends, making some new ones and enjoying life sciences in such a great 🍂autumn🍁 environment!
09.10.2025 12:26 — 👍 0 🔁 0 💬 0 📌 0
Feeling a bit of a Britney Spears vibe doing the presentation! Thank you for the opportunity to all the organizers of Cell Physics 2025!
09.10.2025 12:20 — 👍 0 🔁 0 💬 0 📌 0You may think it has finished but 🦒 AI4Life -@ai4life.bsky.social - is very much alive✨! Check out my presentation at Cell Physics conference today at Saarbrücken! You can check it in Zenodo!
zenodo.org/records/1730...
Happy to share that ShapeEmbed has been accepted at @neuripsconf.bsky.social 🎉 SE is self-supervised framework to encode 2D contours from microscopy & natural images into a latent representation invariant to translation, scaling, rotation, reflection & point indexing
📄 arxiv.org/pdf/2507.01009 (1/N)
Visual of segmented human induced pluripotent stem cells with the key workshop dates: Symposium on November 10-11, Hackathon on November 12-14th in Zurich Switzerland
We're happy to announce the 2025 International OME-NGFF workshop 🎉
📅 Dates:
- Symposium: Nov 10–11, 2025
- Hackathon: Nov 12–14, 2025
📍 Location: Zurich, Switzerland
Full details & registration: www.biovisioncenter.uzh.ch/en/events/Up...
#bioimaging #openscience #OMENGFF #OMEZarr
(1/x 🧵)
Prou (ex-)supervisor & (always) mentor of @ai4life.bsky.social @egomezm.bsky.social Teresa Zulueta Coarasa; @danifranco93.bsky.social @cfusterbarcelo.bsky.social Carlos Garcia Lopez de Haro @uc3m @cienciauc3m
29.05.2025 13:57 — 👍 3 🔁 2 💬 0 📌 0
First workshop is rolling! 🚀 We’re diving into the BioImage Model Zoo @bioimageIO — where life scientists meet powerful AI tools for bioimage analysis.
Let’s explore what’s inside the Zoo! 🐾
No he podido evitar pensar en la charla que di en el
@t3chfest.es
al ver este vídeo de @tamayostuff.bsky.social desmontando el lobby de las revistas científicas.
No todo lo que brilla es oro y no todos los artículos científicos son verdad.
www.youtube.com/watch?v=xq3X...
Thank you #neubiaspasteur2025 for the great energy!
My slides on AI-based bioimage analysis pipelines (and SAMJ!) are now up on Zenodo.
I hope you took away something new! 💡
🔗 zenodo.org/records/1539...
I think we had a similar idea…
13.05.2025 12:16 — 👍 1 🔁 0 💬 0 📌 0
Thank you very much to @florianjug.bsky.social and The Column for such an amazing talk! It’s always great to hear from you! #neubiaspasteur2025
13.05.2025 12:10 — 👍 6 🔁 2 💬 1 📌 0
Great recipe from @cfusterbarcelo.bsky.social on how to train a DL model
13.05.2025 09:24 — 👍 11 🔁 5 💬 0 📌 0These materials are from today's Ágora Session lead by the Signal Theory and Communications department at
@uc3m.es and organized by Lucía Schmidt-Santiago 🙌👩💻
🚀 Materials from my session on Advanced CNNS — (slides + notebook) now available on Zenodo!
An introduction and very practical pov on CNNs and hands-on tasks on classification, detection & segmentation.
🔗https://t.co/g8KCMprM1C
Wrapping up an incredible two days at EPFL!
From inspiring talks & workshops to lab visits & great conversations, it’s been amazing connecting with new and old friends.
Sad to leave so soon—thanks for having me! Until next time! 🚀🔬💙
📝 Slides & workshop materials are now available! 🎉
If you missed my talk at EPFL Open Microscopy 2025, you can find everything on Zenodo:
🔗 zenodo.org/records/1502...
Also includes deepImageJ & SAMJ guides for the afternoon workshop! 🧬🔬
🚀 Excited to be at EPFL Open Microscopy & AI Workshop 2025 today, sharing insights on deep learning for bioimage analysis! 🎤🔬
Let's talk AI & microscopy! 🤖🧬
www.epfl-open-microscopy.com
Jajajajja! Muchas gracias!
13.03.2025 16:46 — 👍 0 🔁 0 💬 0 📌 0
Además, tenéis mis diapositivas del #t3chfest10 disponibles en Zenodo.org por si os habéis perdido algún detalle! 📡
👉 zenodo.org/records/1501...
Muchísimas gracias a toda la gente que ha asistido a mi charla en el #t3chfest10 👏 He disfrutado un montón gracias a este maravilloso público! Muchas gracias también a la organización @t3chfest.es 🚀📡
13.03.2025 12:00 — 👍 3 🔁 2 💬 1 📌 0
Muy buena la charla de @cfusterbarcelo.bsky.social aplicando ciencia para combatir la desinformación, tanto por contenido como de forma.
Enhorabuena…
#t3chfest10
Muchísimas gracias! Espero que la hayas disfrutado almenos casi tanto como yo! 📡🙌
13.03.2025 11:58 — 👍 0 🔁 0 💬 0 📌 0Me ha hecho mucha gracia esto! Jajaja! Muchas gracias por asistir! Espero que la hayas disfrutado tanto como yo! 📡
13.03.2025 11:57 — 👍 1 🔁 0 💬 1 📌 0
Foto de una mujer en un escenario, en la pantalla gigante se lee "Desinformación y antenas de telecomunicación: Cómo combatir el miedo con ciencia"
Me vengo al track 2 a escuchar a @cfusterbarcelo.bsky.social que nos va a hablar de paranoicos de las antenas, esto promete #t3chfest10
13.03.2025 09:22 — 👍 1 🔁 1 💬 1 📌 0
Si te has quedado sin entrada, podrás disfrutar de mi charla a través del LIVE de YouTube! No te pierdas como fue discutirse contra negacionistas del 5G! #t3chest10
👉🏻 www.youtube.com/live/gM5SvaV...
