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Martin Jones

@martinjones.bsky.social

Ex-physicist in a biology institute, working on image analysis and building new hardware at the Francis Crick Institute ORCID: 0000-0003-0994-5652

2,480 Followers  |  1,879 Following  |  42 Posts  |  Joined: 30.08.2023  |  1.757

Latest posts by martinjones.bsky.social on Bluesky

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Great to see one of our own Lucy Collinson picking up the Distinguished Scientist Award at M and M this year. Well deserved and a wonderful accolade. Congratulations Lucy! @royalmicrosoc.bsky.social

28.07.2025 19:32 โ€” ๐Ÿ‘ 17    ๐Ÿ” 5    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
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A beautiful tour through an AAV-PHP.B-GFP-transduced intact cochlea as visualized via lightsheet microscopy after tissue clearing. Magenta is a hair cell marker, yellow is a neuron marker, and green is AAV-GFP (relatively low hair cell transduction rate in this specific sample).

24.07.2025 15:59 โ€” ๐Ÿ‘ 58    ๐Ÿ” 8    ๐Ÿ’ฌ 4    ๐Ÿ“Œ 2
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Weโ€™re hiring: Executive Director - Open Science Hardware Foundation Job Summary The Open Science Hardware Foundation (OSHF) is a U.S.-based 501c3 not-for-profit organization working to foster enabling ecosystem for open-source development of scientific instruments, eq...

We're #hiring! The Open Science Hardware Foundation seeks an Executive Director to lead our growing non-profit. We seek expertise in: Executive Leadership Resource Mobilization Strategic program development Effective Communication
#openscience #openhardware
minifi.ca/ZSxhj

14.07.2025 18:55 โ€” ๐Ÿ‘ 10    ๐Ÿ” 14    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 3

The registration for our #CCPvolumeEM community meeting is now open!

Join us in person in London (at
@crick.ac.uk) or online on 3rd November to discuss the computational needs of #volumeEM

www.eventbrite.co.uk/e/towards-a-...

#vEM #BioImageAnalysis

22.07.2025 15:47 โ€” ๐Ÿ‘ 2    ๐Ÿ” 1    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Big news! volumeEM has been ranked the second most requested technology of 2024 in Biological Imaging in the latest Euro-Bioimaging Annual Report!

๐Ÿ“– Read the full report here: www.eurobioimaging.eu/news/euro-bi...

#volumeEM

22.07.2025 12:39 โ€” ๐Ÿ‘ 14    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Funded Projects - swissuniversities

Our project BioFAIR: Towards FAIR Practices in Bioimaging has been selected for funding through the swissuniversities Open Science II Programme (www.swissuniversities.ch/en/topics/op...)!

More OME-Zarr and open microscopy community events on the horizon yay!!! ๐Ÿ”ฅ๐Ÿ”ฅ๐Ÿ”ฅ

21.07.2025 07:29 โ€” ๐Ÿ‘ 54    ๐Ÿ” 13    ๐Ÿ’ฌ 2    ๐Ÿ“Œ 0
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๐Ÿ“ข The July newsletter is out!

Updates from our nodes, recent events, training opportunities, job offers... everything you need to know about France-BioImaging is inside.

How to read it? Click here โคต๏ธ
france-bioimaging.org/newsletter/j...

16.07.2025 09:19 โ€” ๐Ÿ‘ 6    ๐Ÿ” 4    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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#EUProject | #BioImaging & AI

โžก๏ธ BioImage Model Zoo by @ai4life.bsky.social is a platform for #AI models in biological imaging

โžก๏ธ To find out about the training courses and tools available to help you use the platform correctly for your area of study, visit: www.embrc.eu/project/ai4life/

๐ŸŒŠ๐Ÿงช๐Ÿฆ‘

16.07.2025 13:48 โ€” ๐Ÿ‘ 15    ๐Ÿ” 6    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Zarr is hiring again! Build scalable bioimaging solutions, collaborate globally, and join the Friedrich Miescher Institute for Biomedical Research as a Computational Scientist or Research Software Engineer
www.fmi.ch/education-ca...

16.07.2025 18:26 โ€” ๐Ÿ‘ 15    ๐Ÿ” 9    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Spatial Transcriptomics Facility Manager - PharosAI at Queen Mary University of London Explore an exciting academic career as a Spatial Transcriptomics Facility Manager - PharosAI. Don't miss out on other academic jobs. Click to apply and explore more opportunities.

Calling all #SpatialOmics people - how'd you like to run a brand new facility in London?

www.jobs.ac.uk/job/DNX827/s...

16.07.2025 07:57 โ€” ๐Ÿ‘ 2    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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Recent Webinars Showcasing Our FAIR Image Data Projects - German BioImaging Website of German BioImaging - Gesellschaft fรผr Mikroskopie und Bildanalyse. Contains also the webpages of I3D:bio, information infrastructure for BioImage Data

Over the past few weeks, we've been actively highlighting our projects focused on FAIR image data management and OME-Zarr. Here is a collection, we've collected the related links to the webinars on our news page for you to (re)watch anytime! ๐ŸŽฅ๐Ÿ”ฌ: bit.ly/4nHu1DL

#FAIRdata#OMEZarr#Bioimaging

15.07.2025 11:13 โ€” ๐Ÿ‘ 10    ๐Ÿ” 4    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
Calling all data - Nature Methods As life sciences research becomes enmeshed in the age of AI, real experimental data are more valuable than ever.

As life sciences research becomes enmeshed in the age of AI, real experimental data are more valuable than ever. Read more in this month's Editorial.

www.nature.com/articles/s41...

14.07.2025 16:04 โ€” ๐Ÿ‘ 12    ๐Ÿ” 8    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
Seeing the Invisible with Electron Microscopy
YouTube video by Francis Crick Institute Seeing the Invisible with Electron Microscopy

If youโ€™ve ever wondered how we get high resolution images of incredibly tiny things, check out our latest video with @em-stp.bsky.social

They discuss how electron microscopes use beams of electrons to see things that light microscopes canโ€™t.
www.youtube.com/watch?v=YMAe...

14.07.2025 15:47 โ€” ๐Ÿ‘ 16    ๐Ÿ” 10    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
A map showing South West England and Wales, labelled "Graph of British Rivers". Two river courses are shown, labelled 'Wye axis' and 'Exe axis'. 

Does anyone read these descriptions, or am I wasting my time?

A map showing South West England and Wales, labelled "Graph of British Rivers". Two river courses are shown, labelled 'Wye axis' and 'Exe axis'. Does anyone read these descriptions, or am I wasting my time?

Graph of British Rivers

05.07.2025 12:33 โ€” ๐Ÿ‘ 2992    ๐Ÿ” 664    ๐Ÿ’ฌ 87    ๐Ÿ“Œ 37
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๐ŸšจJoin us! We're soon opening 3 postdoctoral positions in #AIDrivenBiology. Seeking biologists (especially microbiology and infection biology), computer scientists, and microscopy developers. Ideal candidates are those eager to use or develop next-gen tech for cell biology. Get in touch (DM/email)

10.07.2025 08:34 โ€” ๐Ÿ‘ 48    ๐Ÿ” 31    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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3rd challenge from AI4Life! We're inviting the community to design unsupervised models that preserve spatial & temporal patterns in neuronal data.

๐Ÿ“… Open till Aug 11, 2025
๐Ÿš€ Join now: ai4life.eurobioimaging.eu/challenge-3/

10.07.2025 14:39 โ€” ๐Ÿ‘ 12    ๐Ÿ” 6    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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GloBIAS: strengthening the foundations of BioImage Analysis There is a global need for BioImage Analysis (BIA) as advances in life sciences increasingly rely on cutting-edge imaging systems that have dramatically expanded the complexity and dimensionality of b...

Preprint alert! Want to hear more about the coolest new society on the block? You should check out our new preprint discussing @globias.bsky.social ! Hop into ๐Ÿงต for a couple quick highlights (1/x):

10.07.2025 22:22 โ€” ๐Ÿ‘ 30    ๐Ÿ” 12    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 3
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volume EM visualisation of synthetic scaffolds in bacteria - FocalPlane volume EM visualisation of synthetic scaffolds in bacteria - Volume EM

Volume EM meets synthetic biology

Matthew Lee, Judith Mantell, Martin Warren, Paul Verkade and colleagues use serial section Transmission Electron Tomography (ss-ET) to visualise synthetic โ€˜cytoscaffoldsโ€™ in bacteria.
focalplane.biologists.com/2025/06/27/v...

@volumeem1.bsky.social ๐Ÿ”ฌ

10.07.2025 15:16 โ€” ๐Ÿ‘ 10    ๐Ÿ” 5    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
Image Analysis on high-performance computing | HPC session
YouTube video by Euro-BioImaging Communication Image Analysis on high-performance computing | HPC session

๐Ÿ–ฅ How can bioimaging facilities scale analysis & ensure FAIR data provision?
At #ImageData Community Days, we explored high-performance computing at @vschpc.bsky.social + KU Leuvenโ€™s IT infrastructure for bioimage analysis. @sebastianmunck.bsky.social
๐ŸŽฅ Watch: youtu.be/XWmsOlbSdtQ

24.06.2025 15:05 โ€” ๐Ÿ‘ 16    ๐Ÿ” 5    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
Bioimaging | UZH Research Spotlight
YouTube video by Universitรคt Zรผrich Bioimaging | UZH Research Spotlight

And just like that @katharinaweins.bsky.social and Elvira Isenring managed to make us look cooler than we'll ever be:
www.youtube.com/watch?v=8t8R...

24.06.2025 17:39 โ€” ๐Ÿ‘ 15    ๐Ÿ” 7    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 2

Awesome primer on bioimaging, starring the effortlessly cool @virginieuhlmann.bsky.social and @joelluethi.bsky.social

24.06.2025 22:58 โ€” ๐Ÿ‘ 7    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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The 2nd AI4Life Challenge is live!
Calling the AI & bioimaging community to tackle a key microscopy challenge: removing noise while preserving detail.

๐Ÿ“ฆ Paired noisy/clean datasets
๐Ÿ“ˆ Ground-truth evaluation
๐Ÿง  DL focus

Build, test, compete ๐Ÿ‘‰ ai4life.eurobioimaging.eu/challenge-2/

27.06.2025 13:33 โ€” ๐Ÿ‘ 27    ๐Ÿ” 15    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 2
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The ABIC Training & Education Working Group is excited to share the ABIC Microscopy Curriculum!

๐Ÿ“… Date: 16 & 17 July 2025
โฐ Time: 13:00โ€“16:00 SAST / 11:00โ€“14:00 GMT
๐Ÿ’ป Format: Zoom webinar(3 hours per day)

๐Ÿ”— Register today and join us in advancing African excellence in bioimaging! bit.ly/3GtURyz

07.07.2025 12:50 โ€” ๐Ÿ‘ 5    ๐Ÿ” 3    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
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๐Ÿ“ข SAVE THE DATE!
"1st Annual Meeting of India BioImaging"
Where: JSS AHER, Mysuru
When: December 11โ€“12, 2025
And it is Free Registration | Accommodation Provided
Theme of the meeting:
"Recent Advances & Innovations in Microscopy, Imaging Infrastructure & Global Collaborations"

08.07.2025 07:25 โ€” ๐Ÿ‘ 3    ๐Ÿ” 3    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 0
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What does it mean to be part of #EuroBioImaging? Why is Flanders BioImaging ๐Ÿ‡ง๐Ÿ‡ช unique? @sebastianmunck.bsky.social, Flanders BioImaging Spokesperson and Chair of the #EuroBioImaging Panel of Nodes answers this & more... in less thanโฑ๏ธ 1 minute 15 seconds! Check it out ๐Ÿ‘€

10.07.2025 06:33 โ€” ๐Ÿ‘ 8    ๐Ÿ” 4    ๐Ÿ’ฌ 1    ๐Ÿ“Œ 1
Congratulations to the Euro-BioImaging UK Node! The UK Euro-BioImaging Node has received a ยฃ1.8 million strategic award from UKRI-BBSRC and UKRI-MRC to expand access to cutting-edge imaging technologies for UK researchers. This five-year investmentโ€ฆ

Thank you @eurobioimaging.bsky.social for the nice article about our recently announced funding for the UK Node of Euro-BioImaging!

eurobioimaging.eu/news/congrat...

@ukri.org

10.07.2025 15:05 โ€” ๐Ÿ‘ 11    ๐Ÿ” 2    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 0
napari roadmap blog post โ€” napari blog documentation

๐Ÿš€The napari team is excited to announce our brand new development roadmap โ€” a community-informed vision for the future of napari!

๐Ÿ”Read the blog to learn about our process and priorities:
napari.org/island-dispa...

๐Ÿ—บ๏ธOR check out the roadmap itself on napari.org:
napari.org/stable/roadm...

10.07.2025 20:03 โ€” ๐Ÿ‘ 23    ๐Ÿ” 5    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1

Come work at Nature Methods! A dream job. I know from experience ๐Ÿ˜„

10.07.2025 12:35 โ€” ๐Ÿ‘ 36    ๐Ÿ” 23    ๐Ÿ’ฌ 0    ๐Ÿ“Œ 1
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๐Ÿ”ฌ๐”๐Š ๐„๐ฎ๐ซ๐จ-๐๐ข๐จ๐ˆ๐ฆ๐š๐ ๐ข๐ง๐  ๐๐จ๐๐ž ๐ฌ๐ž๐œ๐ฎ๐ซ๐ž๐ฌ ยฃ๐Ÿ.๐Ÿ–๐Œ from @ukri.org

This will:
-Democratise access to cutting-edge biological and biomedical imaging
-Support 200+ researchers yearly
-Boost open science

Thanks to BBSRC and MRC for this major upgrade! ๐Ÿš€

Congrats to the entire UK Node team ๐Ÿ‘

Link in repliesโฌ‡๏ธ

30.05.2025 13:43 โ€” ๐Ÿ‘ 40    ๐Ÿ” 15    ๐Ÿ’ฌ 3    ๐Ÿ“Œ 6

@martinjones is following 20 prominent accounts