Sebi

Cool. What is the major advantage over pyapp-kit.github.io/magicgui/ ?

Congrats! This is really cool.

Amazing and super, super important!

Wow!

I really hate it when scientists keep saying that “we need to rebuild trust in science,” because it implies that scientists are to blame for the mistrust rather than the millions of dollars of dark money that have funded political attacks on science in order to advance a far right agenda.

I am still digesting all the info from the OME-NGFF hackathon last week.

So I decided to make a little UI for some of the code created there (just to play around), which one can easily show to interested colleagues 😜.

CZI --> OME-ZARR with some options ...

By far not perfect but still fun!

ZEISS Microscopy development team of ZEISS Lightfield 4D microscope system

ZEISS Lightfield 4D has been nominated for the prestigious Thuringian Innovation Award! 🎉The jury has made their selections - now it's your turn to decide on the "Audience Award 2025". 👉 Support us with a "thumbs up" : zeiss.ly/innovationspreis2025-voting
Voting is open until Nov 21, 2025. ⌛

Vote for this really cool system (totally biased opinion) :-)

It was an amazing event and I learned a lot which will help me to drive our discussions about OME-ZARR at @zeiss-microscopy.bsky.social

Thanks for having me there.

Hi @nkiaru.bsky.social ping me :-)

Hi Fans of Feedback Microscopy,

what would you do when you have access to the pixel stream from @zeiss-microscopy.bsky.social inside @napari.org?

Btw, it works as well in Fiji&ImageJ :-)

Sidenote: Experiments started from "outside" do not update the ZEN UI. But they are executed by ZENservice.

I honestly think that a clear and smart regulation of AI can be a strong competive advantage for Europe.

Unregulated AI in contrast might destroy the world we know and love ...

I count on you @florianjug.bsky.social

Ah, I see. Cool.

napari-czitools/src/napari_czitools/_io.py at 2e587ae0a46c5128c97573c487574d3f5a7d9935 · sebi06/napari-czitools napari plugin to open CZI image files and their metadata - sebi06/napari-czitools

Hi @jni.codes I thought you mean what I (try) do here:

github.com/sebi06/napar...

I just meant that a while ago i started to read CZI images into Xarrays.

Before that I had to use custom code to label the axis sliders in Napari, but now this just works out-of-the-box thanks to labelled arrays.

GitHub - sebi06/napari-czitools: napari plugin to open CZI image files and their metadata napari plugin to open CZI image files and their metadata - sebi06/napari-czitools

This works already, doesn't it.

In my (experimental) github.com/sebi06/napar... I was nicely surprised to see that using Xarrays made my custom code to label axes in Napari based on dimension order useless :-)

It works now out of the box

Finally - the latest release of our pylibCZIrw supports also MacOS.

Check: pypi.org/project/pyli...

My favorite thingy: Direct data streaming and stage control from Java!

nice to see our ZEN API from @zeiss-microscopy.bsky.social in action. *.proto Files --> Java --> Pixel Stream in Fiji 😉

If you want more info check

github.com/zeiss-micros...

github.com/sebi06/ZEN_P...

That’s Mifobio Spirit @gdrimabio.bsky.social … fun sample thanks Frédéric Bolze

GitHub - sebi06/ZEN_Python_CZI_Smart_Microscopy_Workshop: Material to showcase and test several tools and packages releated to ZEN, OAD, ZEN-API. CZI image files and python packages related to those t... Material to showcase and test several tools and packages releated to ZEN, OAD, ZEN-API. CZI image files and python packages related to those topics - sebi06/ZEN_Python_CZI_Smart_Microscopy_Workshop

Getting ready for the Smart Microscopy Workshop at the EPFL in Lausanne. Cannot wait to get started ... 😀

www.zeiss.ch/mikroskopie/...

The code for the ZEN API & Python related topics can be found here:

github.com/sebi06/ZEN_P...

Chatkontrolle stoppen! Die EU-Kommission will Messenger-Dienste wie WhatsApp und Signal zwingen, alle privaten Nachrichten und Fotos in Echtzeit zu scannen. Angeblich zum Kinderschutz. In Wahrheit bedeutet die Chatkontrolle...

Bald könnten ALLE Chat-Nachrichten von den Behörden durchsucht werden – selbst ohne Verdacht! Das entscheiden *heute* die Minister*innen. Sag Nein zur Chatkontrolle! Jetzt unterzeichnen ✍️ weact.campact.de/petitions/ch...

You need to add our ZEN API interface to that site?

github.com/zeiss-micros...

Kind off .... but by rahter by showing off out ZEN API at an AiryScan Demo.

Guess what i am just doing ...?

Americans: tell your friends who are worried about Tylenol that there's a safe alternative available in the UK.
For a modest fee, I will send them Paracetamol, which is NHS-approved for pregnancy and for children.
You can even get it combined with decongestant to make a tasty hot lemon drink.

The first day is open for all (while day 2 and 3 will be hands-on with a limited number of people)

- Learn about concepts and tools available
- AI tools within ZEISS ecosystem
- Guided Acquisition without coding
- ZEN Scripting
- ZEN API - Control ZEN via Python

and more!

Hi Fans of Smart Microscopy,

Are you ready to automate your next large scale microscopy experiment and work smarter, not harder?

Join us for the Smart Microscopy workshop organized by EPFL Bio-Imaging Platform (Lausanne) and @zeiss-microscopy.bsky.social

www.zeiss.ch/mikroskopie/...

I saw this in my vaccation in a cafe in France.
As a person creating AI software tools I hope that is not true but I am not so sure anymore ...

And now the real challenge starts - the data analysis :-)