Bora Gurel, MD, Ph.D's Avatar

Bora Gurel, MD, Ph.D

@boragurel.bsky.social

Computational pathologist, specializing in Uropathology. AÜTF ‘01, HÜTF ‘07, JHU ‘11, ICR '23. Ex-Doçent. Views most definitely my own. Occasional #Formula1 posts 😉 Clinician Scientist in the De Bono lab #pathsky #medsky

1,567 Followers  |  1,422 Following  |  81 Posts  |  Joined: 09.09.2023  |  2.1861

Latest posts by boragurel.bsky.social on Bluesky

About bloody time...

09.07.2025 09:51 — 👍 2    🔁 0    💬 0    📌 0

Red Bull has confirmed Christian Horner has been released from his role as team principal and CEO.

He will be replaced by Laurent Mekies. #F1

09.07.2025 09:19 — 👍 96    🔁 23    💬 12    📌 10
Post image

Obligatory 4th of July post #July4th

04.07.2025 14:41 — 👍 2    🔁 0    💬 0    📌 0

This is insane. Absolutely no good can come from this.

02.07.2025 23:11 — 👍 37    🔁 15    💬 1    📌 1
Preview
They hate London because it is beautiful Matthew Goodwin went to that there London the other day and what he found shook him to his core.

Blistering piece from @iandunt.bsky.social on Matthew Goodwin's visit to London.

"The success of London is a point-blank, up-against-the-wall-motherfucker refutation of the right-wing populist world view."

open.substack.com/pub/iandunt/...

27.06.2025 07:46 — 👍 620    🔁 185    💬 47    📌 24

I am once again pitching my romantic comedy:

- two academics start dating
- discover they are each other's terrible reviewer
- hijinks ensue

Working title: Love is Double-Blind

18.06.2025 10:55 — 👍 2636    🔁 350    💬 99    📌 66
A poster showing icons for 40 different visualization types, categorized by goal – e.g. "showing shares" or "showing flows" or "showing developments over time".

A poster showing icons for 40 different visualization types, categorized by goal – e.g. "showing shares" or "showing flows" or "showing developments over time".

📊 There are *so* many chart types out there. Which one should you use for what kind of data and goal?

I tried to answer the question in a new blog post (and poster!): www.datawrapper.de/blog/chart-t...

16.06.2025 19:14 — 👍 108    🔁 36    💬 2    📌 3
Video thumbnail

Why do random images always make the nicest looking brushes 😭 #art #meme #procreate #brushes #digitalart #markiplier

14.06.2025 20:51 — 👍 2    🔁 1    💬 0    📌 0
Frankenstein | Guillermo del Toro | Official Teaser | Netflix
YouTube video by Netflix Frankenstein | Guillermo del Toro | Official Teaser | Netflix

youtu.be/x--N03NO130?... Only Monsters Play God…

01.06.2025 02:50 — 👍 6327    🔁 1535    💬 184    📌 463
Post image

HFF cells stained for DNA ⚪, intermediate filaments 🟠, microtubules 🔴 and actin 🔵.

#FluorescenceFriday
#SciArt

30.05.2025 14:18 — 👍 28    🔁 6    💬 1    📌 0

I can similarly tell when the default ggplot2 palette has been used, but I don't mind it as much, I suppose 😊

19.05.2025 18:45 — 👍 0    🔁 0    💬 0    📌 0

The new Neil Halloran documentary on Smallpox has completely changed how I see the RFK Jr. version of the world. Neil (softly) argues that realizing that disease isn't the fault of the sick /or/ the fault of the Gods ushered in a new future where we felt the authority to care for each other.

17.05.2025 02:28 — 👍 8566    🔁 1418    💬 112    📌 102
Defeating a Virus That Killed Half a Billion People – The Plea
YouTube video by Neil Halloran Defeating a Virus That Killed Half a Billion People – The Plea

Another tour de force from
@neilhalloran.bsky.social. A must watch for scientists, biologists, educators. #theplea #science #pathsky 🧪

30.04.2025 10:18 — 👍 10    🔁 3    💬 1    📌 0
A light blue diagram depicting the sea, with the water's surface at the top, and just below it is an outline of the Mary Rose, with the depth (12m, 40ft or 6.7 fathoms). There is a line showing the seabed, which takes a rapid dive into the vertical...

A light blue diagram depicting the sea, with the water's surface at the top, and just below it is an outline of the Mary Rose, with the depth (12m, 40ft or 6.7 fathoms). There is a line showing the seabed, which takes a rapid dive into the vertical...

On the anniversary of the sinking of the Titanic, we thought we'd answer a question that's often asked,

"If they raised the Mary Rose, why not raise the Titanic?"

Allow our scaled diagram to explain...

15.04.2025 08:21 — 👍 13134    🔁 5358    💬 215    📌 1317

Any editors who see this interested in an editorial from two NIH-funded physician researchers on the dismantling of science and public health in the US? It’s clear and compelling, if I do say so myself.

01.03.2025 03:28 — 👍 98    🔁 47    💬 4    📌 1

The reason this is such a big deal is that Trumpism, an ideology of pathological insecurity and bullying, requires you to submit. When you don’t submit, it calls everything about them into question, and they can’t handle that. So don’t submit. Defy the fascist scum.

01.03.2025 18:29 — 👍 3734    🔁 815    💬 125    📌 35
FLIMngo reliably predicts fluorescence lifetimes across photon count conditions. (a) Fluorescence lifetime maps of the ground truth alongside the maps predicted by phasor plot analysis, FLI-Net, FPFLI, and FLIMngo. The ground truth fluorescence lifetime maps are identical for both low and high photon counts, as the true fluorescence lifetime value per pixel is independent of photon counts. (b) Box-and-whisker plots of the MSE scores for predicted fluorescence lifetime maps from high photon counts compared to ground truth data. (c) Box-and-whisker plots of the MSE scores for predicted fluorescence lifetime maps from low photon counts compared to ground truth data. As FPFLI performs pixel binning, the MSE scores were calculated only on pixels representing non-background regions in the ground truths. For the Box-and-whisker plots, the line indicates the median, while the box represents the interquartile range; whiskers extend to the furthest data points within 1.5 times the interquartile range and the dots show outliers44. The data consisted of 40 simulated images with high photon counts (100-2500 photons per pixel) and the same images with low photon counts (25-100 photons per pixel), respectively. Statistical significance was calculated using a Kruskal-Wallis test followed by Dunn’s multiple comparisons, where *** denotes p < 0.001, **** denotes p < 0.0001, and “n.s.” denotes non-significant differences.

FLIMngo reliably predicts fluorescence lifetimes across photon count conditions. (a) Fluorescence lifetime maps of the ground truth alongside the maps predicted by phasor plot analysis, FLI-Net, FPFLI, and FLIMngo. The ground truth fluorescence lifetime maps are identical for both low and high photon counts, as the true fluorescence lifetime value per pixel is independent of photon counts. (b) Box-and-whisker plots of the MSE scores for predicted fluorescence lifetime maps from high photon counts compared to ground truth data. (c) Box-and-whisker plots of the MSE scores for predicted fluorescence lifetime maps from low photon counts compared to ground truth data. As FPFLI performs pixel binning, the MSE scores were calculated only on pixels representing non-background regions in the ground truths. For the Box-and-whisker plots, the line indicates the median, while the box represents the interquartile range; whiskers extend to the furthest data points within 1.5 times the interquartile range and the dots show outliers44. The data consisted of 40 simulated images with high photon counts (100-2500 photons per pixel) and the same images with low photon counts (25-100 photons per pixel), respectively. Statistical significance was calculated using a Kruskal-Wallis test followed by Dunn’s multiple comparisons, where *** denotes p < 0.001, **** denotes p < 0.0001, and “n.s.” denotes non-significant differences.

Deep learning for fluorescence lifetime predictions enables high-throughput in vivo imaging

by Gabriele S. Kaminski Schierle and team:

www.biorxiv.org/content/10.1...

01.03.2025 13:37 — 👍 11    🔁 1    💬 0    📌 0
Video thumbnail

Hello BlueSky! This is my first post! I don’t really know the culture yet, so I will just share a cozy little animation I made recently. #japan #cozy #fox #cat #onsen #cozy

12.12.2024 01:22 — 👍 15    🔁 3    💬 1    📌 0
Fox and Cat, in autumn and winter, framed on a wall

Fox and Cat, in autumn and winter, framed on a wall

Awesome, can't wait to complete the set! 🥰

20.02.2025 08:10 — 👍 0    🔁 0    💬 0    📌 0

Hi Jed! We bought the winter and autumn versions of Fox and Cat over the holidays, and we absolutely love them! I was wondering if the spring and summer versions were also available anywhere. Thanks!

19.02.2025 14:42 — 👍 1    🔁 0    💬 1    📌 0
Post image

Fellow NSA - National Security Agency veterans. Look at what’s happened at the National Cryptologic Museum. They covered up with brown paper the photos of Women in American Cryptology. All in response to President Trump’s anti-diversity executive order.

02.02.2025 04:51 — 👍 12587    🔁 6795    💬 948    📌 1438
Post image Post image Post image Post image

#PathSky 43M with a giant, pendulous mass of the inner thigh. The outside clinician and pathologist were concerned for WDL, but their MDM2 FISH was negative. Certainly there is nature fat with fibrous septae and an increased number of somewhat atypical stromal cells? False negative FISH?

30.01.2025 20:15 — 👍 13    🔁 3    💬 2    📌 1

Thalidomide would like a word...

26.01.2025 21:55 — 👍 28    🔁 8    💬 3    📌 1

There's a really simple test for Schrodinger's Autist:

Explain the broken social rule to the culprit. Is the person mortified and eager to follow that rule going forward? Then the problem was social skills!

Is the person defensive, accusatory, and unrepentant? The problem was NOT social skills!

22.01.2025 16:38 — 👍 376    🔁 82    💬 9    📌 0

If your Christianity causes you to be offended by someone asking the most powerful person in the country to be merciful towards the powerless, then you have profoundly misunderstood the teachings of Jesus Christ.

22.01.2025 01:20 — 👍 13323    🔁 4029    💬 196    📌 302

Oh, this is right up my alley, thanks!

22.01.2025 16:31 — 👍 1    🔁 0    💬 0    📌 0
Post image

Thank the lord for Private Eye

22.01.2025 09:31 — 👍 15861    🔁 2495    💬 210    📌 126
A horrific image of a someone who seems to have his hands tied behind his back. A big cat (the predator kind, not the overfed pet kind) has jumped up at him and is devouring his face. Blood splashes on the floor.

A horrific image of a someone who seems to have his hands tied behind his back. A big cat (the predator kind, not the overfed pet kind) has jumped up at him and is devouring his face. Blood splashes on the floor.

For Blue Monday we can't think of anything more appropriate than this charming depiction of a man getting his face eaten off by a leopard.

#MosaicMonday

20.01.2025 09:31 — 👍 13363    🔁 3790    💬 193    📌 299
Panel 1: Mark Zuckerberg stands on the stage at a Meta all-hands meeting, wearing a little chain and a shirt that says "Cool Dude." "I think our company could use more Masculine Energy," he says into a mic. In the crowd, an employee raises their hand. "Excuse me, Mr. Zuckerberg," the person asks. Panel 2: The person stands up, asking, "By "Masculine Energy," do you mean a mature definition where men in power use their relative strength to protect and uplift those less privileged?" Panel 3: The person continues, "…or a more childish definition where men in power are free to be aggressive and harm others without being held accountable?" Panel 4: Zuck stands silent for a beat. Panel 5: "You're all fired," he says.

Panel 1: Mark Zuckerberg stands on the stage at a Meta all-hands meeting, wearing a little chain and a shirt that says "Cool Dude." "I think our company could use more Masculine Energy," he says into a mic. In the crowd, an employee raises their hand. "Excuse me, Mr. Zuckerberg," the person asks. Panel 2: The person stands up, asking, "By "Masculine Energy," do you mean a mature definition where men in power use their relative strength to protect and uplift those less privileged?" Panel 3: The person continues, "…or a more childish definition where men in power are free to be aggressive and harm others without being held accountable?" Panel 4: Zuck stands silent for a beat. Panel 5: "You're all fired," he says.

"Masculine Energy"

20.01.2025 04:43 — 👍 40563    🔁 9398    💬 278    📌 204

we have these! they are called books

15.01.2025 14:40 — 👍 270    🔁 35    💬 6    📌 0

@boragurel is following 20 prominent accounts