Björn Usadel's Avatar

Björn Usadel

@usadellab.bsky.social

Plant Omics, Machine Learning, Genomics, Tools, Data Managment Labs in Forschungszentrum Jülich and HHU Düsseldorf Uni https://www.fz-juelich.de/en/ibg/ibg-4 https://www.biological-data-science.hhu.de/en/biological-data-science

768 Followers  |  572 Following  |  81 Posts  |  Joined: 01.12.2023  |  1.7177

Latest posts by usadellab.bsky.social on Bluesky

The Crown Princess Victoria Professorship in Biodiversity Professorship in Biodiversity. The University of Gothenburg hereby announces a unique and prestigious position – the

🎉We have announced a new professorship at the University of Gothenburg 🇸🇪 to celebrate our Crown Princess’s 50th birthday!
🌿Broad focus on biodiversity — from microbes to modelling
📢A fantastic opportunity for researchers working across scales and disciplines!

🔗 web103.reachmee.com/ext/I005/103...

03.10.2025 05:29 — 👍 42    🔁 38    💬 1    📌 0

Now we just need more target journal support (esp. plant journals) but this is really something needed....

15.10.2025 07:12 — 👍 3    🔁 2    💬 0    📌 0

Very nice that sounds really cool! Congrats

14.10.2025 13:03 — 👍 1    🔁 0    💬 0    📌 0

This is "bulk tissue" classical RNAseq only, so it is a plus (but not strictly necessary) to be familiar RNA extraction from plant tissues. Analysis is easy to learn and we teach this often.

09.10.2025 07:46 — 👍 0    🔁 0    💬 1    📌 0
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Stellenangebote: Universität Hohenheim Aktuelle Stellenangebote der Universität Hohenheim.

The Cluster of Excellence @greenrobust.de is hiring:

- Computer Scientist/Research data manager: shorturl.at/xSvvO
- Data steward: shorturl.at/l6NCv
- Scientific coordinator 'Plant Perturbation Atlas': shorturl.at/vBU6x

Deadline: Friday, 7 November 2025

RT are welcome

#plantjobs #plantscijobs

07.10.2025 09:59 — 👍 16    🔁 26    💬 1    📌 0
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Next, Hannah Lepper from @franzificht.bsky.social lab in Düsseldorf is investigating the enigmatic role of trehalose 6-phosphate during land plant evolution #MAdLand2025

02.10.2025 09:37 — 👍 17    🔁 6    💬 0    📌 0
PhD position in the field of plant sciences/transcriptome analyses Do you want to contribute to sustainable plant use with your work? Then you are exactly right at the institute`s department Bioinformatics (IBG-4) of the Institute for Bio and Geosciences at the Forsc...

Anika in my department is looking for a Phd student on buckwheat stress responses. Maybe this is something for you?
#plantjobs
www.fz-juelich.de/en/careers/j...

26.09.2025 16:07 — 👍 4    🔁 4    💬 1    📌 0
Job Openings

#PlantSciJobs #PlantSciJob

W2-Professorship: Plant Genetics

@uni-kiel.de

Deadline: 19 October 2025
www.deutsche-botanische-gesellschaft.de/en/job-openi...

26.09.2025 10:33 — 👍 7    🔁 13    💬 0    📌 0
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Lucas Munnes closes this Wednesday’s session at the #SOLRUB2025 presenting about a #pangenome in the Morelloid clade. Different species have different levels of polyploidy with S. nigrum being highest (6x). Synteny with S. americanum (2x). For nigrum subA ~ americanum. subB & subC ~ villosum (4x).

24.09.2025 15:42 — 👍 5    🔁 2    💬 0    📌 0

Laura breeding /generating the eggplants we all want to have.

24.09.2025 16:08 — 👍 3    🔁 0    💬 0    📌 0
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Jaime Prohens brings us a wonderful presentation about the importance of #eggplant populations to elucidate the molecular players in agronomical traits at #SOLRUB2025. Having a good population was essential to identify the gene behind the formation of #pickles in eggplants.

24.09.2025 09:51 — 👍 2    🔁 1    💬 0    📌 0
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Nice presentation by Martina Stromvik at the #SOLRUB2025aboit the #allotetraploid potato species, Solanum acaule. This species has been used to introgress cold tolerance into some potato varieties like Viking. One of the ancestral parents remains elusive in its identification.

24.09.2025 14:35 — 👍 1    🔁 1    💬 0    📌 0
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An-Sofie Tas brings us a presentation of a wild coffee species, Coffea dactylifera, at #SOLRUB2035. She proposes the use of this species as alternative to the coffee crops although breeding is necessary. This species has a compact form, similar to arabica. It also has smaller beans and sweet taste.

24.09.2025 14:55 — 👍 1    🔁 1    💬 0    📌 0
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Switching from biodiversity to the omics technologies session at the #SOLRUB2025. Presenting Adi Avni about plant-based sensors. The idea , convert plant gene responses in a signal read by an electrode that can transmit the information to a computer.

24.09.2025 15:24 — 👍 1    🔁 1    💬 0    📌 0
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Lucas Munnes just provided some update on Morelloid genomes and where Solanum nigrum might have come from at #SOLRUB2025

24.09.2025 15:52 — 👍 3    🔁 1    💬 0    📌 0
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It took us a very long time but here is Arslan with the Nicotina glauca genome and the leaf developmental series transcriptome and metabolome at #SOLRUB2025

24.09.2025 15:46 — 👍 3    🔁 0    💬 0    📌 0
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Vivien out of her usual lichen track presents the analysis of Alkengi officinarum and transcriptomic change during the calyx color change at #SOLRUB2025.

24.09.2025 15:23 — 👍 4    🔁 0    💬 0    📌 0
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Job Alert! We're hiring a BIOINFORMATICIAN / NGS SPECIALIST to support our new Molecular Biodiversity Lab in the @terra-cluster.org at @unituebingen.bsky.social. Like the idea to use your skills for understanding biodiversity? To work on diverse questions in a wonderful place? Apply!
Please repost!

24.09.2025 08:46 — 👍 31    🔁 41    💬 2    📌 2
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Be our new colleague! 🎉
The Dept of Molecular and Cellular Biology at the University of Geneva is hiring an Assistant Professor or Associate Professor.

👉 More details here: lnkd.in/e8Z9eAm4
👉 Our department: mocel.unige.ch

Please feel free to share this opportunity with your network.

15.09.2025 14:33 — 👍 42    🔁 48    💬 0    📌 1
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Kristina Gruden follows on the first session the third day at #SOLRUB3025. She is presenting us the last developments of the study of an ERF transcription factor as regulator for an #endophyte community in #potato. Pti5 is involved in potato immunity. They used a knowledge network to get new results

24.09.2025 08:15 — 👍 1    🔁 1    💬 0    📌 0
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Luciana Gaccione closes the session at the #SOLRUB2025 describing their work building an #eggplant graph-based #pangenome and its application to identify genes behind several agronomical traits.

24.09.2025 08:49 — 👍 1    🔁 1    💬 0    📌 0
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Luciana Gaccione presents her phantastic results on the eggplant pangenome and panphenome at #SOLRUB2025.

24.09.2025 08:45 — 👍 1    🔁 0    💬 0    📌 0

Great congratulations. Really nice news.

24.09.2025 05:51 — 👍 1    🔁 0    💬 0    📌 0
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Identification of a plastid-localized amino acid transporter | Plantae Plastids are more than photosynthetic compartments, they also are responsible for the biosynthesis of nine proteinogenic amino acids (which explains why animals, lacking plastids…

Plant Science Research Weekly -- Identification of a plastid-localized amino acid transporter (Nature Plants) @apmweber.bsky.social @franzikuhnert.bsky.social (Summary by Mary Williams @PlantTeaching.bsky.social)
buff.ly/6wqdKby

#PlantaePSRW

23.09.2025 14:15 — 👍 4    🔁 2    💬 0    📌 0
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We come back from our lunch to #SOLRUB2025 with Giovanni Giuliano. He is presenting about the elucidation of the molecular mechanisms behind the evolution of #tomato fruit shape. Elongated ovoid tomatoes appeared in Italy in the 18th century. Non ribbed tomatoes appeared in the US in 19th century.

23.09.2025 12:26 — 👍 4    🔁 2    💬 0    📌 0
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Marie Bolger closes the session at the #SOLRUB2025 with a presentation about the application of Helixer to the annotation of the #Solanaceae genomes.

23.09.2025 08:51 — 👍 5    🔁 3    💬 0    📌 0
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..and finally Marie's new Helixer models for Solanales at #SOLRUB2025

23.09.2025 09:04 — 👍 4    🔁 0    💬 0    📌 0
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And here is Marie about her new Solanacae models. Here the model B which is particularly good on potato.

23.09.2025 09:01 — 👍 1    🔁 0    💬 0    📌 0
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Marie explains how she selects data for her Helixer gene annotations using Mercator quality control and Pubplant for genome selection at #SOLRUB2025.
Read more about Pubplant:
www.frontiersin.org/journals/pla...

23.09.2025 08:59 — 👍 0    🔁 0    💬 0    📌 0

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