Lukas Käll

Article 1 The Parties undertake, as set forth in the Charter of the United Nations, to settle any international dispute in which they may be involved by peaceful means in such a manner that international peace and security and justice are not endangered, and to refrain in their international relations from the threat or use of force in any manner inconsistent with the purposes of the United Nations.

My quote of the day

North Atlantic Treaty
Signed April 4, 1949

DDLS Research School Postdoc call 2026 Call for Academic and Industrial Postdoctoral Fellowships in Data-Driven Life Science 2026 Generic Description of the DDLS Postdoc Program The SciLifeLab and Wallenberg National Program for Data-Drive...

Now open: DDLS Postdoctoral Fellowship Call 2026

22 funded postdoc projects in data-driven life science, with academic and industry tracks

Call details:
www.scilifelab.se/data-driven/...

Matchmaking platform:
www.scilifelab.se/data-driven/...

#postdoc #DDLS #SciLifeLab #researchjobs

DDLS Research School Postdoc call 2026 Call for Academic and Industrial Postdoctoral Fellowships in Data-Driven Life Science 2026 Generic Description of the DDLS Postdoc Program The SciLifeLab and Wallenberg National Program for Data-Drive...

Now open: DDLS Postdoctoral Fellowship Call 2026

22 funded postdoc projects in data-driven life science, with academic and industry tracks

Call details:
www.scilifelab.se/data-driven/...

Matchmaking platform:
www.scilifelab.se/data-driven/...

#postdoc #DDLS #SciLifeLab #researchjobs

PhD position reopened in ProtAIomics DN
🔗 Project details:
www.protaiomics.eu/project/dc12...
👩‍🔬 Meet the PI:
www.protaiomics.eu/supervisor/v...
👉 Apply here:
www.protaiomics.eu/call-for-app...
#PhDposition #MSCA #Bioinformatics #Proteomics #ArtificialIntelligence #DoctoralTraining #ResearchCareers

Upcoming call: 2026 DDLS Research School Postdoc Program The SciLifeLab and Wallenberg National Program for Data-Driven Life Science is preparing for yet another major recruitment round. The upcoming call for DDLS postdoctoral researchers will open in Janua...

DDLS Research School Postdoc Program opens in January 2026. 🧪🖥️

@lukaskall.bsky.social, Director of the program, explains how the initiative is designed to identify talent and support researchers who want to build long-term careers in Sweden. ↓

www.scilifelab.se/news/intervi...

⏱️Only a few days left to apply to the ProtAIomics Doctoral Network.
If you want to work at the intersection of AI and proteomics, with international training and mobility across Europe, this is your moment.Deadline: 30 November
👉Apply now: www.protaiomics.eu
#Proteomics #AI #MSCA #PhDOpportunities

US HUPO - Distinguished Contribution Award

Congratulations to Mike MacCoss on receiving the Donald F. Hunt Distinguished Contribution in Proteomics Award from US HUPO!
us-hupo.org/Distinguishe...

US HUPO - Computational Proteomics Award

Congratulations to Bill Noble on receiving the 2026 Gil Omenn Computational Proteomics Award from US HUPO!
us-hupo.org/Computationa...

May Institute on Computation & Statistics for MS and Proteomics is taking great shape. Fantastic new and repeat instructors and lots of new content. We are grateful to our sponsors Fragmatics and Biognosys. Keep an eye on the website computationalproteomics.khoury.northeastern.edu

Vaccinations to prevent cervical cancer have plummeted in Britain Blame declining confidence, a lack of convenience and rising complacency

This is terrible

Vaccinations to prevent cervical cancer have plummeted in Britain

www.economist.com/britain/2025...

Jansson’s Temptation (Creamy Potato Casserole) Recipe One of Sweden’s most delicious exports, Jansson’s temptation, otherwise known as Janssons frestelse, is a creamy potato casserole with melty onions and umami-packed tinned sprats (see Tip) There are a few theories as to the origin of this Swedish classic, which is often served with schnapps as part of the Julbord, or Christmas table One suggests that it was named after a 1928 silent film, while an older story says that it was named after the opera singer Per Adolf Janzon — but that one’s “not so likely” according to Jens Linder, a Swedish food writer

One of Sweden’s most delicious exports, Jansson’s temptation, otherwise known as Janssons frestelse, is a creamy potato casserole with melty onions and umami-packed tinned sprats.

Open-Source and FAIR Research Software for Proteomics Scientific discovery relies on innovative software as much as experimental methods, especially in proteomics, where computational tools are essential for mass spectrometer setup, data analysis, and interpretation. Since the introduction of SEQUEST, proteomics software has grown into a complex ecosystem of algorithms, predictive models, and workflows, but the field faces challenges, including the increasing complexity of mass spectrometry data, limited reproducibility due to proprietary software, and difficulties integrating with other omics disciplines. Closed-source, platform-specific tools exacerbate these issues by restricting innovation, creating inefficiencies, and imposing hidden costs on the community. Open-source software (OSS), aligned with the FAIR Principles (Findable, Accessible, Interoperable, Reusable), offers a solution by promoting transparency, reproducibility, and community-driven development, which fosters collaboration and continuous improvement. In this manuscript, we explore the role of OSS in computational proteomics, its alignment with FAIR principles, and its potential to address challenges related to licensing, distribution, and standardization. Drawing on lessons from other omics fields, we present a vision for a future where OSS and FAIR principles underpin a transparent, accessible, and innovative proteomics community.

Open-Source and FAIR in relation to Proteomics to speed up research and innovation, from KTH (@lukaskall.bsky.social) and others

pubs.acs.org/doi/10.1021/...

Register now! Five days of keynotes, workshops, flash talks, posters, and more on computational mass spectrometry Confirmed keynote speakers Armin Soleymaniniya · Arthur Declercq · Claire Koenig · Hannah Boekweg · Jonas Scheid · Karel Berka · Matthias Anagho-Mattanovich · Roman Bushuiev · Valdemaras Petrosius 📆 19-23 January 2026 📍 Harrachov, Czechia

Registration is now open for the EuBIC-MS Winter School 2026!

Join us in Harrachov, Czechia for a week of keynotes, workshops, and networking on computational MS.

Info and registration: eubic-ms.org/events/2026-...

#EuBIC2026 #MassSpectrometry #MassSpec #Bioinformatics #Proteomics #Metabolomics

🚨 A new open-access resource of @proteinatlas.bsky.social

A human pan-disease🩸 atlas of the circulating proteome

👉 www.proteinatlas.org/humanproteom...
📖 www.science.org/doi/10.1126/...

🤩 @buenoalvez.bsky.social and many more!

@kawresearch.bsky.social
@scilifelab.se
@kthuniversity.bsky.social

There is a position open in our lab, within this network. Our project deals with assessing identification and quantification errors for MS-based proteomics. www.protaiomics.eu/project/dc13...
Please check out all the project descriptions at the site below:

Last week we had our yearly organizational meeting, this time in Vienna, Austria. We had 3 great days discussing the activities of the past year and planning the upcoming ones. Thanks to everyone who joined and contributed to a great meeting!

🌟 Great Opportunity!
The ProtAIomics Doctoral Network (ProtAIomics-DN) is launching soon!

💡 We are offering 16 fully funded PhD positions to shape the future of AI-driven proteomics research.

👉 Stay tuned for updates!
#PhD #Proteomics #ArtificialIntelligence #MSCA #HorizonEurope #PhDOpportunities

Assistant Professor in Data-driven cell and molecular biology At Stockholm University the Department of Biochemistry and Biophysics (DBB) and the Department of Molecular Biosciences, The Wenner-Gren Institute (MBW) are looking to fill one position as DDLS fellow

Come work with me. Excellent startup package. su.varbi.com/en/what:job/...

So grateful and honored to receive the MCP Lectureship Award at the #ASBMBProteomics meeting at the Broad Institute! Huge thanks to the wonderful organizers and to everyone—past and present—who’s been part of our lab.

ESPOD, the EMBL-EBI/Sanger postdoctoral fellowship. Applications deadline 30 September. Image credit: Karen Arnott / EMBL-EBI

Recruitment is now open for the EMBL-EBI–Sanger Postdoctoral Programme.

ESPOD builds on the collaborative relationship between EMBL-EBI and the @sangerinstitute.bsky.social, offering projects that combine experimental and computational approaches.

www.ebi.ac.uk/research/pos...

🧬🖥️🔬#postdocjob

Nordic MSP 2025 – Mass Spectrometry & Proteomics Conference in Odense Join leading scientists at Nordic MSP 2025 at ODEON in Odense, Denmark. A premier conference on mass spectrometry and proteomics.

The last day for registering for the Nordic Conference in Mass Spectrometry and Proteomics 2025 in Odense, Denmark, 1-3rd September 2025, is closing in. Please sign up before Friday!
www.nordicmsp2025.com

I heard this morning that my informatics colleague Dr. Atul Butte passed after a battle with cancer. He was a giant in the field & inspired many of us over his distinguished career. He was a passionate champion of the power of big data & his impact on our field is immeasurable. RIP Atul & thanks.

Wondering about the next step in your proteomics career? Curious to know how proteomics experts ended up at their current positions? Looking for tips to help you discover what you really like? Join our Meet-the-Expert session! Wednesday, June 18th | 12:30 - 13:30 Vauban 2 #EuPA2025 #EuPAFPS2025

hu.MAP3.0: atlas of human protein complexes by integration of >25,000 proteomic experiments | Molecular Systems Biology imageimagehu.MAP3.0 integrates mass spectrometry experiments to identify human protein complexes. Using this resource, this study characterizes covariation of complexes, identifies mutually exclusive ...

Very excited that our work describing hu.MAP3.0 is published in @molsystbiol.org. Here we use machine learning to integrate >25k mass spectrometry experiments to place ~70% of human proteins into 15k protein complexes.

www.embopress.org/doi/full/10....

NIH funding supporting the HMMER and Infernal software projects has been terminated. NIH states that our work, as well as all other federally funded research at Harvard, is of no benefit to the US.

Foundation model for mass spectrometry proteomics Mass spectrometry is the dominant technology in the field of proteomics, enabling high-throughput analysis of the protein content of complex biological samples. Due to the complexity of the instrument...

Interested in prediction tasks involving peptide mass spectra? Our foundation model uses pre-trained spectrum representations learned by a de novo sequencing model to solve many tasks better and with less data, from recognizing chimeras to separating N- and O-glycopeptides. arxiv.org/abs/2505.10848

Industry PhD position in Computational Protein Design We are looking for a motivated PhD student to join us in a unique, collaborative project between our Affinity Ligand Design team at Cytiva and the Elofsson group at Stockholm University, where we will...

Come work with me an Sarah and become a part of DDLS danaher.wd1.myworkdayjobs.com/CytivaJobsPP...

Are you based in the U.S. 🇺🇸 or Canada 🇨🇦 and thinking of doing research in Europe?

ERC grants offer up to €4.5 million to support groundbreaking, investigator-driven frontier research in all fields.

Watch the dedicated info session for researchers in your region👉 youtu.be/92QYink1Lik

#ChooseEurope

Close-up images of protein folding | Knut and Alice Wallenberg Foundation Proteins are the building blocks of life. They build our cells, send signals and transport substances. But they will only work correctly if they attain their exact 3-dimensional form. Gunnar von Heijn...

#Proteins build our cells send signals and transport substances They will only work if they attain their exact 3-dimensional form Gunnar von Heijne is demonstrating at a previously inconceivable level of detail how protein folding is achieved @stockholm-uni.bsky.social #science
tinyurl.com/53n9s4nv